Variant report

Variant	rs7170734
Chromosome Location	chr15:74989406-74989407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
EDC3	TF binding region
ENSG00000179335	Chromatin interaction
ENSG00000140505	Chromatin interaction
ENSG00000260919	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11072499	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1128628	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11857192	0.82[AMR][1000 genomes]
rs12441817	0.83[AMR][1000 genomes]
rs17861109	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17861120	0.84[AMR][1000 genomes]
rs4073149	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4646421	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4646903	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56291837	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495119	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7497036	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7497906	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8023786	0.82[AMR][1000 genomes]
rs8029744	0.83[AMR][1000 genomes]
rs8030076	0.82[AMR][1000 genomes]
rs8040674	0.85[AMR][1000 genomes]
rs950323	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9788672	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74987800-74989600	Active TSS	Fetal Kidney	kidney
2	chr15:74988600-74989600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:74989200-74989600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr15:74989200-74989600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:74989200-74989600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:74989400-74989600	Active TSS	Primary hematopoietic stem cells	blood
7	chr15:74989400-74989600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:74989400-74989600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:74989400-74989600	Enhancers	A549	lung
10	chr15:74989400-74989800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr15:74989400-74989800	Enhancers	Dnd41	blood
12	chr15:74989400-74989800	Enhancers	K562	blood
13	chr15:74989400-74990000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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