Variant report

Variant	rs11857192
Chromosome Location	chr15:74822444-74822445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74822427..74825765-chr15:74831292..74834825,5	MCF-7	breast:
2	chr15:74814820..74820281-chr15:74822115..74824937,6	MCF-7	breast:
3	chr15:74822266..74825721-chr15:74827870..74831013,4	K562	blood:
4	chr15:74818058..74820598-chr15:74821407..74823908,2	K562	blood:
5	chr15:74802902..74805887-chr15:74821101..74823845,2	MCF-7	breast:
6	chr15:74817985..74820137-chr15:74821769..74824391,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1030888	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10459601	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072491	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072499	0.83[AMR][1000 genomes]
rs11857341	0.81[EUR][1000 genomes]
rs12439054	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439113	0.80[AMR][1000 genomes]
rs12441794	0.81[EUR][1000 genomes]
rs2099593	0.81[EUR][1000 genomes]
rs2415243	0.82[EUR][1000 genomes]
rs28854237	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4073149	0.84[AMR][1000 genomes]
rs4548815	0.83[EUR][1000 genomes]
rs4887156	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887158	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56274514	0.89[EUR][1000 genomes]
rs56291837	0.82[AMR][1000 genomes]
rs56363130	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59665282	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495104	0.83[EUR][1000 genomes]
rs6495112	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495119	0.83[AMR][1000 genomes]
rs7170734	0.82[AMR][1000 genomes]
rs7175512	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7497036	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7497906	0.82[AMR][1000 genomes]
rs8023786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028893	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8040674	0.87[AMR][1000 genomes]
rs950323	0.81[AMR][1000 genomes]
rs9788672	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74817000-74822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:74818000-74823400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:74818200-74823200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:74818200-74823200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
6	chr15:74818400-74823200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:74818600-74822600	Weak transcription	Hela-S3	cervix
8	chr15:74818600-74823200	Weak transcription	A549	lung
9	chr15:74818600-74823200	Weak transcription	NHDF-Ad	bronchial
10	chr15:74818600-74823600	Weak transcription	HSMMtube	muscle
11	chr15:74819000-74823200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:74819600-74823200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:74821000-74824200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:74821200-74824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:74821400-74823800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr15:74821400-74824600	Enhancers	NH-A	brain
17	chr15:74821800-74823400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:74821800-74824400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:74821800-74824400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:74821800-74824600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:74821800-74824600	Enhancers	Placenta	Placenta
22	chr15:74821800-74824600	Enhancers	HMEC	breast
23	chr15:74821800-74824600	Enhancers	Osteobl	bone
24	chr15:74822000-74823000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr15:74822000-74824600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
27	chr15:74822200-74822800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr15:74822200-74823400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:74822200-74824400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:74822400-74822600	Enhancers	HSMM	muscle
31	chr15:74822400-74822800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:74822400-74822800	Enhancers	HUVEC	blood vessel
33	chr15:74822400-74823600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr15:74822400-74823600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr15:74822400-74823600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr15:74822400-74823600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr15:74822400-74823600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr15:74822400-74824000	Enhancers	H9 Cell Line	embryonic stem cell
39	chr15:74822400-74824400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:74822400-74824400	Enhancers	NHLF	lung
41	chr15:74822400-74824600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:74822400-74824600	Enhancers	NHEK	skin
43	chr15:74822400-74824800	Enhancers	H1 Cell Line	embryonic stem cell

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