Variant report

Variant	rs28854237
Chromosome Location	chr15:74803620-74803621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74802902..74805887-chr15:74821101..74823845,2	MCF-7	breast:
2	chr15:74802902..74806494-chr15:74809022..74812313,5	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1030888	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10459601	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11072491	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857192	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11857341	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12439054	0.91[EUR][1000 genomes]
rs12441794	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2099593	0.82[EUR][1000 genomes]
rs2415243	0.84[EUR][1000 genomes]
rs4548815	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4887156	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4887158	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56274514	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56363130	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59665282	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6495104	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6495107	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6495112	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7175512	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7497036	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8023786	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028893	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9788672	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:74767600-74804800	Weak transcription	Lung	lung
3	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:74775800-74807000	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:74782400-74811400	Weak transcription	Stomach Mucosa	stomach
6	chr15:74782800-74803800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr15:74782800-74803800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:74782800-74804000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:74782800-74804000	Weak transcription	Fetal Thymus	thymus
10	chr15:74782800-74804200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:74782800-74804200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:74782800-74806000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:74782800-74807400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:74795000-74804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:74795000-74804000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:74795200-74806600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:74797600-74804000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:74797600-74808200	Weak transcription	Fetal Stomach	stomach
19	chr15:74798600-74815600	Weak transcription	Thymus	Thymus
20	chr15:74798800-74804400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:74798800-74807600	Weak transcription	Primary T cells from cord blood	blood
22	chr15:74798800-74809200	Weak transcription	HMEC	breast
23	chr15:74799000-74804400	Weak transcription	Osteobl	bone
24	chr15:74799000-74806200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:74799000-74809200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:74799000-74809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:74799000-74811400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:74803200-74803800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr15:74803200-74804000	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr15:74803200-74804800	Enhancers	Spleen	Spleen
31	chr15:74803200-74805800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:74803400-74804000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr15:74803400-74804000	Enhancers	GM12878-XiMat	blood
34	chr15:74803400-74804200	Enhancers	Primary B cells from cord blood	blood
35	chr15:74803400-74804800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:74803400-74804800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:74803400-74805200	Enhancers	HUVEC	blood vessel
38	chr15:74803400-74811800	Weak transcription	HSMM	muscle
39	chr15:74803600-74804400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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