Variant report

Variant	rs6495104
Chromosome Location	chr15:74768101-74768102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74767141..74770202-chr15:74771183..74775167,3	K562	blood:
2	chr15:74752499..74754529-chr15:74767621..74770146,2	K562	blood:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000260103	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1030888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10459601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs10459648	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs11072484	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072491	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11072492	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs11072494	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs11072495	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs11072496	0.83[GIH][hapmap]
rs1128628	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11543198	0.81[MEX][hapmap]
rs11629749	0.80[GIH][hapmap]
rs11629946	0.84[GIH][hapmap]
rs11854461	0.89[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs11857192	0.83[EUR][1000 genomes]
rs12439054	0.82[EUR][1000 genomes]
rs12439113	0.84[YRI][hapmap]
rs12441794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441932	0.83[TSI][hapmap]
rs12443108	0.81[MEX][hapmap]
rs1866113	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs1866114	0.87[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1992145	0.81[JPT][hapmap]
rs2068982	0.86[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs2099593	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2289187	0.89[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs2415242	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs2415243	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28362872	0.89[AMR][1000 genomes]
rs28362901	0.87[AMR][1000 genomes]
rs28854237	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2899826	0.84[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3985310	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs4073149	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs4548815	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886601	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs4887145	0.89[AMR][1000 genomes]
rs4887146	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4887150	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs4887156	0.82[EUR][1000 genomes]
rs4887158	0.82[EUR][1000 genomes]
rs4887159	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs4887163	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs56274514	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56363130	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59665282	0.82[EUR][1000 genomes]
rs6495107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495112	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs6495116	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs6495117	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs6495118	0.89[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs6495119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7161990	0.84[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7163775	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs7166701	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs7171838	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs7175512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs7178568	0.84[GIH][hapmap]
rs7497036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs750608	0.87[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8023786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8028430	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs8028893	0.82[EUR][1000 genomes]
rs8029116	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs8029215	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs8036616	0.89[AMR][1000 genomes]
rs8040120	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap]
rs8041068	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8041121	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8041357	0.81[MEX][hapmap]
rs8042323	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9635320	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs9788672	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:74754600-74770800	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:74754600-74773000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:74754600-74773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74754600-74773800	Weak transcription	Gastric	stomach
8	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
9	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
10	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
13	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
15	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:74754800-74768200	Weak transcription	NHDF-Ad	bronchial
19	chr15:74754800-74770000	Weak transcription	NHLF	lung
20	chr15:74754800-74771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:74755200-74768200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:74755200-74773400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:74755200-74775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:74755200-74776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:74755200-74789200	Weak transcription	NHEK	skin
27	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:74755400-74768400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:74755400-74770800	Weak transcription	Fetal Lung	lung
31	chr15:74755400-74775000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:74755600-74768400	Weak transcription	HMEC	breast
34	chr15:74755800-74770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:74756800-74781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:74757000-74782000	Weak transcription	Primary B cells from cord blood	blood
37	chr15:74757200-74782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:74757400-74770000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:74760600-74769600	Strong transcription	Primary T cells from cord blood	blood
40	chr15:74760800-74785600	Weak transcription	Ovary	ovary
41	chr15:74761000-74769000	Weak transcription	Liver	Liver
42	chr15:74761000-74771200	Weak transcription	HSMM	muscle
43	chr15:74761000-74773800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
45	chr15:74761200-74770000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:74761400-74769400	Weak transcription	K562	blood
47	chr15:74761400-74771000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:74761600-74769600	Weak transcription	HepG2	liver
49	chr15:74762000-74768200	Strong transcription	GM12878-XiMat	blood
50	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum

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