Variant report

Variant	rs56363130
Chromosome Location	chr15:74808818-74808819
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74673800..74676322-chr15:74808073..74810964,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1030888	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10459601	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11072491	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857192	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11857341	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12439054	0.88[EUR][1000 genomes]
rs12441794	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2099593	0.85[EUR][1000 genomes]
rs2415243	0.87[EUR][1000 genomes]
rs28854237	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548815	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4887156	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4887158	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56274514	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59665282	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6495104	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6495107	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6495112	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7175512	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7497036	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8023786	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028893	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8041068	0.81[EUR][1000 genomes]
rs9788672	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74782400-74811400	Weak transcription	Stomach Mucosa	stomach
3	chr15:74798600-74815600	Weak transcription	Thymus	Thymus
4	chr15:74798800-74809200	Weak transcription	HMEC	breast
5	chr15:74799000-74809200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:74799000-74809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:74799000-74811400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:74803400-74811800	Weak transcription	HSMM	muscle
9	chr15:74804800-74809600	Weak transcription	Spleen	Spleen
10	chr15:74804800-74821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:74806600-74813200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:74808000-74810800	Weak transcription	Fetal Brain Male	brain

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