Variant report

Variant	rs6495119
Chromosome Location	chr15:74934440-74934441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74934214..74936976-chr15:74941708..74943417,2	MCF-7	breast:
2	chr15:74911959..74914507-chr15:74933976..74936666,3	K562	blood:
3	chr15:74934223..74936994-chr15:75029274..75031013,2	K562	blood:
4	chr15:74932436..74935063-chr15:75043587..75046477,2	MCF-7	breast:
5	chr15:74933643..74936641-chr15:75037979..75039941,2	K562	blood:
6	chr15:74907065..74909615-chr15:74934193..74937135,2	K562	blood:
7	chr15:74933532..74936602-chr15:75133936..75137022,3	MCF-7	breast:
8	chr15:74921651..74924062-chr15:74933331..74936263,2	MCF-7	breast:
9	chr15:74932203..74934571-chr15:74936265..74938863,2	K562	blood:
10	chr15:74934342..74936615-chr15:75247598..75250189,2	K562	blood:
11	chr15:74932973..74935701-chr15:75073922..75075968,2	MCF-7	breast:
12	chr15:74933237..74935346-chr15:75060041..75062599,2	K562	blood:
13	chr15:74927124..74931460-chr15:74931543..74935973,6	K562	blood:
14	chr15:74933224..74935053-chr15:75061299..75063816,2	MCF-7	breast:
15	chr15:74932895..74935104-chr15:74940068..74942469,2	MCF-7	breast:
16	chr15:74932057..74934651-chr15:74938157..74940129,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1030888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs10459601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10459648	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs1048943	0.81[MEX][hapmap]
rs11072492	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs11072494	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs11072495	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs11072496	0.92[GIH][hapmap]
rs11072497	0.87[GIH][hapmap]
rs11072498	0.87[GIH][hapmap]
rs11072499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1128628	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11629749	0.89[GIH][hapmap]
rs11629946	0.87[GIH][hapmap]
rs11854461	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs11857192	0.83[AMR][1000 genomes]
rs12439054	0.81[AMR][1000 genomes]
rs12439113	0.84[YRI][hapmap]
rs12441932	0.84[TSI][hapmap]
rs17861109	0.81[AMR][1000 genomes]
rs2068982	0.89[GIH][hapmap];0.84[TSI][hapmap]
rs2289187	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2415242	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs2899826	0.84[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs3985310	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs4073149	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646421	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap]
rs4886601	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs4887150	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs4887156	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4887158	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4887159	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs4887163	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs56291837	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59665282	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6495104	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6495112	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6495116	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs6495117	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs6495118	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs6495121	0.82[CHD][hapmap];0.87[GIH][hapmap]
rs7161903	0.87[GIH][hapmap]
rs7161990	0.84[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs7163775	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs7166701	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs7170734	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7171838	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs7175512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7178568	0.87[GIH][hapmap]
rs7497036	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7497342	0.87[GIH][hapmap]
rs7497906	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs750608	0.87[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs8023786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8028430	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs8028893	0.83[AMR][1000 genomes]
rs8029116	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs8029215	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs8040674	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs950323	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9635320	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs9672559	0.82[CHD][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs9788672	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74910600-74936400	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:74911000-74938000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:74911400-74934800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:74911400-74936800	Strong transcription	Dnd41	blood
5	chr15:74911400-74937400	Strong transcription	Primary T cells from cord blood	blood
6	chr15:74914000-74934600	Strong transcription	Fetal Thymus	thymus
7	chr15:74914000-74934600	Strong transcription	Ovary	ovary
8	chr15:74914200-74934600	Strong transcription	Brain Germinal Matrix	brain
9	chr15:74914200-74935000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:74915800-74934600	Strong transcription	Fetal Brain Female	brain
11	chr15:74919400-74934800	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:74920000-74934800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:74920200-74935000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:74920400-74937400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:74920800-74945600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:74921200-74937800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr15:74921800-74936600	Strong transcription	Spleen	Spleen
18	chr15:74921800-74963400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:74923000-74935800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:74924200-74934600	Strong transcription	Fetal Muscle Leg	muscle
21	chr15:74924200-74936800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr15:74924400-74935400	Strong transcription	Stomach Smooth Muscle	stomach
23	chr15:74924600-74937600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr15:74924800-74937400	Strong transcription	HepG2	liver
25	chr15:74925600-74934800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:74926600-74935000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:74927600-74935000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:74927600-74935600	Weak transcription	Fetal Brain Male	brain
29	chr15:74928000-74934600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:74928800-74943600	Weak transcription	NHDF-Ad	bronchial
31	chr15:74929200-74963400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:74929800-74935800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:74931400-74934600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:74931600-74937400	Strong transcription	Primary B cells from cord blood	blood
35	chr15:74932200-74936800	Genic enhancers	Fetal Intestine Small	intestine
36	chr15:74932400-74934800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr15:74932800-74934600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:74932800-74934600	Weak transcription	Brain Substantia Nigra	brain
39	chr15:74932800-74934600	Weak transcription	Colonic Mucosa	Colon
40	chr15:74932800-74934600	Weak transcription	NH-A	brain
41	chr15:74932800-74934800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:74932800-74934800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:74932800-74934800	Genic enhancers	Lung	lung
44	chr15:74932800-74945600	Weak transcription	HMEC	breast
45	chr15:74933000-74934600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr15:74933000-74934600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:74933000-74934600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:74933000-74934600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:74933000-74934800	Weak transcription	Brain Angular Gyrus	brain
50	chr15:74933000-74934800	Weak transcription	Colon Smooth Muscle	Colon

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