Variant report

Variant	rs11072492
Chromosome Location	chr15:74824123-74824124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74822427..74825765-chr15:74831292..74834825,5	MCF-7	breast:
2	chr15:74814820..74820281-chr15:74822115..74824937,6	MCF-7	breast:
3	chr15:74823864..74826848-chr15:74827847..74829990,2	MCF-7	breast:
4	chr15:74823237..74825654-chr15:74828712..74830605,2	K562	blood:
5	chr15:74822266..74825721-chr15:74827870..74831013,4	K562	blood:
6	chr15:74823437..74825810-chr15:74912083..74914513,2	MCF-7	breast:
7	chr15:74822726..74824283-chr15:74826897..74828835,2	MCF-7	breast:
8	chr15:74817985..74820137-chr15:74821769..74824391,2	MCF-7	breast:
9	chr15:74822467..74830075-chr15:74830932..74835759,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1030889	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs10459601	0.92[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs10459648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10851871	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10851873	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs11072488	0.82[EUR][1000 genomes]
rs11072489	1.00[ASW][hapmap];0.95[LWK][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap]
rs11072490	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11072494	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072495	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072496	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs11072497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs11072498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs11072499	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs11629749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.80[ASN][1000 genomes]
rs11629946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11852291	0.80[EUR][1000 genomes]
rs11854226	0.87[EUR][1000 genomes]
rs11854461	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs11855521	0.84[EUR][1000 genomes]
rs11856543	0.81[EUR][1000 genomes]
rs11857328	0.87[EUR][1000 genomes]
rs12437519	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12439113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439505	0.84[EUR][1000 genomes]
rs12441932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12442013	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591603	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12592906	0.84[EUR][1000 genomes]
rs12594447	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595017	0.84[EUR][1000 genomes]
rs12909573	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16969393	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs16969612	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1821847	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1821848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866113	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1866114	0.85[YRI][hapmap]
rs2068982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2198843	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2289187	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes]
rs2289188	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2415241	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2899826	0.92[ASW][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap]
rs35752918	0.84[EUR][1000 genomes]
rs3985310	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs4073149	0.92[ASW][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4077703	0.80[EUR][1000 genomes]
rs4261483	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4278699	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4324083	0.83[EUR][1000 genomes]
rs4544202	0.80[EUR][1000 genomes]
rs4886599	0.84[EUR][1000 genomes]
rs4886601	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4887150	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs4887151	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4887152	0.89[CEU][hapmap]
rs4887153	0.84[EUR][1000 genomes]
rs4887154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs4887155	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4887159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887160	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887162	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4887163	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4887166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55662551	0.84[EUR][1000 genomes]
rs56367313	0.84[EUR][1000 genomes]
rs56369998	0.86[EUR][1000 genomes]
rs57271230	0.84[EUR][1000 genomes]
rs58473469	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6495103	0.81[EUR][1000 genomes]
rs6495104	0.89[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs6495105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6495106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6495108	0.89[EUR][1000 genomes]
rs6495109	0.89[EUR][1000 genomes]
rs6495112	0.92[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs6495115	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs6495117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495119	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs6495121	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap]
rs7161903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs7161990	0.92[ASW][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap]
rs7163775	0.92[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs7166656	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166701	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes]
rs7167655	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7169985	0.80[EUR][1000 genomes]
rs7171838	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173006	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7176095	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7176491	0.84[ASN][1000 genomes]
rs7177140	0.84[EUR][1000 genomes]
rs7177407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178219	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7178568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs74025818	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7497036	0.92[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs7497342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs750608	0.84[CHD][hapmap];0.84[GIH][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap]
rs8023479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8023865	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025976	0.80[EUR][1000 genomes]
rs8026181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8026923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8028163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8029099	0.81[EUR][1000 genomes]
rs8029116	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8033841	0.80[EUR][1000 genomes]
rs8036030	0.86[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs8036636	0.93[AMR][1000 genomes]
rs8037074	0.83[AMR][1000 genomes]
rs8037211	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs8037436	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8037714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038730	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8040120	0.92[GIH][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap]
rs8040745	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8041030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8041807	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8042832	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8043082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9635320	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9672559	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11072492	SCAMP5	cis	parietal	SCAN
rs11072492	SEMA7A	cis	cerebellum	SCAN
rs11072492	ARIH1	cis	parietal	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
2	chr15:74821000-74824200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:74821200-74824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:74821400-74824600	Enhancers	NH-A	brain
5	chr15:74821800-74824400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74821800-74824400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:74821800-74824600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:74821800-74824600	Enhancers	Placenta	Placenta
9	chr15:74821800-74824600	Enhancers	HMEC	breast
10	chr15:74821800-74824600	Enhancers	Osteobl	bone
11	chr15:74822000-74824600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
13	chr15:74822200-74824400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:74822400-74824400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:74822400-74824400	Enhancers	NHLF	lung
16	chr15:74822400-74824600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:74822400-74824600	Enhancers	NHEK	skin
18	chr15:74822400-74824800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr15:74822600-74824400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:74822600-74824400	Enhancers	Hela-S3	cervix
21	chr15:74822800-74824600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr15:74822800-74824600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:74822800-74827200	Weak transcription	GM12878-XiMat	blood
24	chr15:74823000-74824600	Enhancers	HSMM	muscle
25	chr15:74823200-74824200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:74823200-74824200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:74823200-74824200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:74823200-74824400	Enhancers	A549	lung
29	chr15:74823200-74824400	Enhancers	HepG2	liver
30	chr15:74823200-74824600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:74823400-74824200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:74823400-74824600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:74823600-74824200	Enhancers	HSMMtube	muscle
34	chr15:74823600-74824400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr15:74823600-74824400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr15:74823600-74824400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr15:74823600-74824400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr15:74823600-74824600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr15:74823600-74828000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:74823800-74824200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr15:74823800-74824400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr15:74823800-74827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:74824000-74824200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:74824000-74824400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:74824000-74824400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:74824000-74832000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:74824000-74832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:74824000-74832400	Weak transcription	H9 Cell Line	embryonic stem cell

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