Variant report

Variant	rs11072489
Chromosome Location	chr15:74789404-74789405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:108739971..108742644-chr15:74787396..74789622,2	MCF-7	breast:
2	chr15:74789177..74791447-chr15:74793088..74795027,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260879	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10459648	0.81[MEX][hapmap];0.88[MKK][hapmap]
rs11072490	0.85[AFR][1000 genomes]
rs11072492	1.00[ASW][hapmap];0.95[LWK][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap]
rs11072494	1.00[ASW][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap]
rs11072495	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.93[YRI][hapmap]
rs11543198	0.85[MEX][hapmap]
rs11854226	0.85[AFR][1000 genomes]
rs11854461	0.86[MEX][hapmap]
rs11855521	0.93[AFR][1000 genomes]
rs11856543	0.85[AFR][1000 genomes]
rs11857341	0.80[AFR][1000 genomes]
rs12439113	0.88[YRI][hapmap]
rs12439505	0.95[AFR][1000 genomes]
rs12440645	0.83[AFR][1000 genomes]
rs12441932	0.81[MKK][hapmap]
rs12443108	0.85[MEX][hapmap]
rs12591603	0.85[AFR][1000 genomes]
rs12592493	0.81[AFR][1000 genomes]
rs12592906	0.95[AFR][1000 genomes]
rs12595017	0.95[AFR][1000 genomes]
rs12909573	0.85[AFR][1000 genomes]
rs16969612	0.86[AFR][1000 genomes]
rs1821847	0.86[AFR][1000 genomes]
rs1866113	0.82[MEX][hapmap]
rs1866114	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs2068982	0.82[MEX][hapmap];0.81[MKK][hapmap]
rs2099593	0.86[AFR][1000 genomes]
rs2289187	1.00[ASW][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs2415242	0.82[MEX][hapmap];0.93[MKK][hapmap]
rs2899826	0.92[ASW][hapmap];0.80[LWK][hapmap]
rs35752918	0.94[AFR][1000 genomes]
rs3985310	0.82[MEX][hapmap]
rs4073149	0.92[ASW][hapmap];0.81[LWK][hapmap];0.96[YRI][hapmap]
rs4077703	0.88[AFR][1000 genomes]
rs4261483	0.86[AFR][1000 genomes]
rs4278699	0.88[AFR][1000 genomes]
rs4886599	0.92[AFR][1000 genomes]
rs4886601	1.00[ASW][hapmap];0.95[LWK][hapmap];0.81[MEX][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap]
rs4887150	0.82[MEX][hapmap]
rs4887153	0.93[AFR][1000 genomes]
rs4887154	0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs4887155	0.84[AFR][1000 genomes]
rs4887159	0.82[MEX][hapmap];0.84[MKK][hapmap]
rs4887163	1.00[ASW][hapmap];0.88[LWK][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap]
rs55662551	0.95[AFR][1000 genomes]
rs56367313	0.93[AFR][1000 genomes]
rs56369998	0.81[AFR][1000 genomes]
rs57271230	0.94[AFR][1000 genomes]
rs59946128	0.80[AFR][1000 genomes]
rs6495103	0.80[AFR][1000 genomes]
rs6495105	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs6495108	0.86[AFR][1000 genomes]
rs6495109	0.86[AFR][1000 genomes]
rs6495116	0.82[MEX][hapmap]
rs6495117	0.82[MEX][hapmap]
rs6495118	0.81[MKK][hapmap]
rs7161990	0.92[ASW][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs7163775	0.92[ASW][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.83[AFR][1000 genomes]
rs7166656	0.84[AFR][1000 genomes]
rs7166701	1.00[ASW][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs7167655	0.85[AFR][1000 genomes]
rs7171838	1.00[ASW][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap]
rs7173006	0.86[AFR][1000 genomes]
rs7177140	0.95[AFR][1000 genomes]
rs7178219	0.88[AFR][1000 genomes]
rs750608	0.81[LWK][hapmap]
rs8026923	0.96[YRI][hapmap]
rs8028430	0.82[MEX][hapmap];0.88[MKK][hapmap]
rs8029116	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap]
rs8029215	0.82[MEX][hapmap];0.88[MKK][hapmap]
rs8037436	0.88[AFR][1000 genomes]
rs8038730	0.84[AFR][1000 genomes]
rs8041357	0.85[MEX][hapmap]
rs8042323	0.81[AFR][1000 genomes]
rs8042832	0.86[AFR][1000 genomes]
rs9635320	1.00[ASW][hapmap];0.95[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
8	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:74767600-74804800	Weak transcription	Lung	lung
12	chr15:74768200-74797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:74769800-74800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:74770000-74796600	Weak transcription	HepG2	liver
15	chr15:74770800-74791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:74774000-74798400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:74774000-74800000	Weak transcription	Pancreas	Pancrea
18	chr15:74774000-74803200	Weak transcription	Spleen	Spleen
19	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:74774200-74800200	Weak transcription	Gastric	stomach
21	chr15:74774400-74803200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr15:74774600-74803200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr15:74775800-74807000	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:74782000-74800400	Weak transcription	Adipose Nuclei	Adipose
25	chr15:74782200-74799600	Weak transcription	Placenta	Placenta
26	chr15:74782400-74811400	Weak transcription	Stomach Mucosa	stomach
27	chr15:74782600-74789600	Weak transcription	HSMM	muscle
28	chr15:74782600-74796200	Weak transcription	Hela-S3	cervix
29	chr15:74782800-74789800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:74782800-74791800	Weak transcription	K562	blood
31	chr15:74782800-74794400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:74782800-74794400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr15:74782800-74794400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:74782800-74794800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:74782800-74796600	Weak transcription	Primary B cells from cord blood	blood
36	chr15:74782800-74798400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:74782800-74798800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr15:74782800-74799000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:74782800-74799400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:74782800-74799600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:74782800-74800000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:74782800-74800000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:74782800-74803400	Weak transcription	GM12878-XiMat	blood
44	chr15:74782800-74803800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:74782800-74803800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:74782800-74804000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:74782800-74804000	Weak transcription	Fetal Thymus	thymus
48	chr15:74782800-74804200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:74782800-74804200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:74782800-74806000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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