Variant report

Variant	rs12909573
Chromosome Location	chr15:74810555-74810556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74802902..74806494-chr15:74809022..74812313,5	K562	blood:
2	chr15:74673800..74676322-chr15:74808073..74810964,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10459648	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10851871	0.81[ASN][1000 genomes]
rs11072488	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11072489	0.85[AFR][1000 genomes]
rs11072490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072492	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11072493	0.80[ASN][1000 genomes]
rs11072494	0.83[EUR][1000 genomes]
rs11072495	0.83[EUR][1000 genomes]
rs11852291	0.84[EUR][1000 genomes]
rs11854226	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11855521	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11856543	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11857328	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11857341	0.90[AFR][1000 genomes]
rs12437519	0.80[ASN][1000 genomes]
rs12439113	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12439505	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12440645	0.82[EUR][1000 genomes]
rs12440654	0.82[EUR][1000 genomes]
rs12441932	0.80[EUR][1000 genomes]
rs12442013	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12442097	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12591603	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12592493	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12592512	0.81[ASN][1000 genomes]
rs12592906	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12594447	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12594766	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12595017	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969247	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969612	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1821847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1821848	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2068982	0.80[EUR][1000 genomes]
rs2289187	0.85[EUR][1000 genomes]
rs2289188	0.80[EUR][1000 genomes]
rs2415241	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2415242	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35752918	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4077703	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4261483	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4278699	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4324083	0.87[EUR][1000 genomes]
rs4468560	0.81[EUR][1000 genomes]
rs4544202	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4886599	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4886601	0.88[EUR][1000 genomes]
rs4887152	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4887153	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4887154	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4887155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887159	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4887160	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4887162	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4887163	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4887166	0.81[EUR][1000 genomes]
rs55662551	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56367313	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56369998	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57271230	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495101	0.81[EUR][1000 genomes]
rs6495102	0.81[ASN][1000 genomes]
rs6495103	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495105	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495106	0.81[ASN][1000 genomes]
rs6495108	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495109	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495115	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6495117	0.81[EUR][1000 genomes]
rs6495118	0.80[EUR][1000 genomes]
rs7163775	0.85[EUR][1000 genomes]
rs7166656	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7166701	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7167655	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7169985	0.84[EUR][1000 genomes]
rs7171838	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7173006	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7176095	0.88[EUR][1000 genomes]
rs7176491	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7177140	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7177407	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7178219	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7178568	0.80[ASN][1000 genomes]
rs8023479	0.80[ASN][1000 genomes]
rs8023865	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8026181	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8026923	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8027066	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8028163	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8028430	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8029099	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8029116	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8029215	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8033841	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8037211	0.84[EUR][1000 genomes]
rs8037436	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8037714	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8038730	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8041030	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8041807	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8042832	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8043082	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9635320	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74782400-74811400	Weak transcription	Stomach Mucosa	stomach
3	chr15:74798600-74815600	Weak transcription	Thymus	Thymus
4	chr15:74799000-74811400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:74803400-74811800	Weak transcription	HSMM	muscle
6	chr15:74804800-74821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:74806600-74813200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:74808000-74810800	Weak transcription	Fetal Brain Male	brain
9	chr15:74810200-74811600	Weak transcription	Hela-S3	cervix
10	chr15:74810200-74811600	Weak transcription	HMEC	breast
11	chr15:74810200-74811600	Weak transcription	NHEK	skin
12	chr15:74810400-74815400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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