Variant report

Variant	rs7176095
Chromosome Location	chr15:74886411-74886412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74885278..74889186-chr15:74890286..74893326,4	K562	blood:
2	chr15:74885692..74889192-chr15:74889315..74893477,4	MCF-7	breast:
3	chr15:74883645..74887048-chr15:74903468..74905388,3	MCF-7	breast:
4	chr15:74884292..74886470-chr15:74890567..74893261,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10459648	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072490	0.88[EUR][1000 genomes]
rs11072492	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11072493	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11072494	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11072495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11072496	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11072497	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11072498	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11629749	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11629946	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11854226	0.83[EUR][1000 genomes]
rs11855521	0.81[EUR][1000 genomes]
rs11857328	0.84[EUR][1000 genomes]
rs12437519	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12439113	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12439505	0.81[EUR][1000 genomes]
rs12441932	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442013	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12442097	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12591603	0.86[EUR][1000 genomes]
rs12592906	0.81[EUR][1000 genomes]
rs12594447	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12595017	0.81[EUR][1000 genomes]
rs12909573	0.88[EUR][1000 genomes]
rs1456432	0.83[ASN][1000 genomes]
rs16969247	0.80[EUR][1000 genomes]
rs16969612	0.88[EUR][1000 genomes]
rs1821847	0.88[EUR][1000 genomes]
rs1821848	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2068982	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2198843	0.83[ASN][1000 genomes]
rs2415241	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415242	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2415245	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35752918	0.81[EUR][1000 genomes]
rs4073149	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4261483	0.84[EUR][1000 genomes]
rs4278699	0.84[EUR][1000 genomes]
rs4324083	0.80[EUR][1000 genomes]
rs4886599	0.81[EUR][1000 genomes]
rs4886601	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4887153	0.81[EUR][1000 genomes]
rs4887154	0.83[EUR][1000 genomes]
rs4887155	0.88[EUR][1000 genomes]
rs4887159	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4887160	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4887162	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887163	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887165	0.85[ASN][1000 genomes]
rs4887166	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55662551	0.81[EUR][1000 genomes]
rs56367313	0.81[EUR][1000 genomes]
rs56369998	0.82[EUR][1000 genomes]
rs57271230	0.81[EUR][1000 genomes]
rs58473469	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495108	0.86[EUR][1000 genomes]
rs6495109	0.86[EUR][1000 genomes]
rs6495115	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495117	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495118	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495121	0.83[ASN][1000 genomes]
rs7161903	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7166656	0.88[EUR][1000 genomes]
rs7167655	0.88[EUR][1000 genomes]
rs7171838	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7173006	0.88[EUR][1000 genomes]
rs7177140	0.81[EUR][1000 genomes]
rs7177407	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7178219	0.86[EUR][1000 genomes]
rs7178568	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs74025818	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7497342	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8023479	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8023865	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8025976	0.82[EUR][1000 genomes]
rs8026181	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8026923	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8027066	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028163	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8028430	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8029116	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8029215	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8036636	0.84[AMR][1000 genomes]
rs8037436	0.86[EUR][1000 genomes]
rs8037714	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8038730	0.84[EUR][1000 genomes]
rs8040745	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8041030	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8041807	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8042832	0.88[EUR][1000 genomes]
rs8043082	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9635320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9672559	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv542434	chr15:74885329-74929552	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
2	chr15:74845800-74890400	Weak transcription	A549	lung
3	chr15:74851800-74887800	Strong transcription	GM12878-XiMat	blood
4	chr15:74854800-74888600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr15:74857600-74888200	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr15:74857800-74887600	Strong transcription	Primary T cells from cord blood	blood
7	chr15:74859000-74888600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:74859600-74888000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr15:74860400-74889000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:74860800-74888400	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:74861200-74889800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:74863600-74890800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:74863800-74890400	Weak transcription	Psoas Muscle	Psoas
14	chr15:74864400-74887000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr15:74864400-74888400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:74866800-74890800	Weak transcription	Ovary	ovary
17	chr15:74868400-74886800	Strong transcription	Fetal Intestine Small	intestine
18	chr15:74876600-74888800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:74877200-74888000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:74877400-74890400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:74877600-74887000	Strong transcription	Fetal Intestine Large	intestine
22	chr15:74877800-74888800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:74878000-74890200	Weak transcription	K562	blood
24	chr15:74878200-74887800	Strong transcription	Fetal Thymus	thymus
25	chr15:74878200-74888400	Strong transcription	Liver	Liver
26	chr15:74879800-74888000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:74881000-74890400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr15:74881200-74888800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:74881200-74889600	Weak transcription	Fetal Heart	heart
30	chr15:74881200-74890400	Weak transcription	Fetal Kidney	kidney
31	chr15:74881200-74892200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:74881400-74888400	Strong transcription	Gastric	stomach
33	chr15:74881400-74889800	Strong transcription	Fetal Stomach	stomach
34	chr15:74881400-74890400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:74881400-74890400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:74881400-74890400	Weak transcription	Fetal Brain Male	brain
37	chr15:74881400-74892200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:74881600-74888200	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr15:74881600-74888400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr15:74881600-74890400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:74881800-74888000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr15:74881800-74888000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr15:74881800-74888400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:74881800-74888400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:74881800-74888400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:74881800-74888400	Strong transcription	Brain Cingulate Gyrus	brain
47	chr15:74881800-74888800	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr15:74881800-74888800	Strong transcription	Spleen	Spleen
49	chr15:74881800-74890400	Weak transcription	HSMM	muscle
50	chr15:74882000-74886600	Strong transcription	Thymus	Thymus

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