Variant report

Variant	rs2198843
Chromosome Location	chr15:75001230-75001231
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74987388..74990253-chr15:74999582..75003746,3	MCF-7	breast:
2	chr15:74997334..74999629-chr15:74999776..75002608,3	K562	blood:

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10459648	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10851873	0.86[JPT][hapmap]
rs11072492	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11072493	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs11072494	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11072495	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11072496	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072497	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11072498	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11072500	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11629749	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11629946	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs12439113	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs12441932	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs12442097	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1456432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068982	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2415242	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2415245	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3826041	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4128436	0.93[YRI][hapmap]
rs4886601	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4886605	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4887159	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4887162	0.81[ASN][1000 genomes]
rs4887163	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs4887166	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs58473469	0.82[ASN][1000 genomes]
rs6495116	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6495117	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6495118	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6495121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161903	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7171838	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7176095	0.83[ASN][1000 genomes]
rs7178568	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs74025818	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7495708	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7497342	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8023479	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs8026923	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs8027066	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs8028430	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs8029116	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs8029215	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9635320	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9672559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75000600-75005600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:75000800-75001400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr15:75001200-75003200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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