Variant report

Variant	rs10851873
Chromosome Location	chr15:74860685-74860686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74859628..74861378-chr15:74907474..74909268,2	K562	blood:
2	chr15:74831952..74834220-chr15:74860456..74863439,2	MCF-7	breast:
3	chr15:74860211..74862680-chr15:74866308..74868152,2	MCF-7	breast:
4	chr15:74855746..74857619-chr15:74857871..74860921,3	MCF-7	breast:
5	chr15:74851230..74852983-chr15:74858490..74861014,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260919	Chromatin interaction
ENSG00000179361	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1030889	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap]
rs10459648	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10851871	0.85[JPT][hapmap]
rs11072492	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs11072493	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11072494	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs11072495	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs11072496	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs11072497	0.83[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs11072498	0.83[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs11629749	0.83[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs11629946	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs11854461	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs12437519	0.84[ASN][1000 genomes]
rs12439113	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12441932	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs12442013	0.84[ASN][1000 genomes]
rs12442097	0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs16969247	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs16969393	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866113	0.83[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs2068982	0.82[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs2198843	0.86[JPT][hapmap]
rs2289187	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs2289188	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2415241	0.84[ASN][1000 genomes]
rs2415242	0.83[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3985310	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs4886601	0.82[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs4887150	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs4887151	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs4887154	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs4887159	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4887160	0.84[ASN][1000 genomes]
rs4887163	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs4887165	0.85[ASN][1000 genomes]
rs4887166	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6495105	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6495106	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs6495115	0.84[ASN][1000 genomes]
rs6495116	0.82[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs6495117	0.82[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs6495118	0.83[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs6495121	0.86[JPT][hapmap]
rs7161903	0.83[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs7163775	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs7166701	0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs7171838	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7177407	0.84[ASN][1000 genomes]
rs7178568	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7497342	0.82[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs8023479	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs8023865	0.84[ASN][1000 genomes]
rs8026923	0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs8027066	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs8028430	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs8029116	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs8029215	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs8036030	0.86[JPT][hapmap]
rs8037211	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs8043082	0.85[ASN][1000 genomes]
rs9635320	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs9672559	0.86[JPT][hapmap]
rs9888684	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74839000-74863400	Weak transcription	Gastric	stomach
2	chr15:74839000-74863600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74839200-74860800	Weak transcription	Colonic Mucosa	Colon
4	chr15:74839200-74862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:74839200-74865200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:74839200-74866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:74839200-74866800	Weak transcription	Pancreas	Pancrea
8	chr15:74839400-74865800	Weak transcription	HUVEC	blood vessel
9	chr15:74839400-74880600	Weak transcription	Hela-S3	cervix
10	chr15:74839600-74862400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:74840000-74862000	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
13	chr15:74840800-74862200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:74841000-74862000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:74841000-74862000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:74841200-74862000	Weak transcription	Brain Substantia Nigra	brain
17	chr15:74841200-74862200	Weak transcription	Brain Angular Gyrus	brain
18	chr15:74841200-74862400	Weak transcription	Left Ventricle	heart
19	chr15:74841200-74862600	Weak transcription	Right Ventricle	heart
20	chr15:74841400-74861800	Weak transcription	Thymus	Thymus
21	chr15:74842400-74862000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:74842400-74865000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:74842600-74862000	Weak transcription	NH-A	brain
24	chr15:74843200-74862000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:74843200-74865600	Weak transcription	Esophagus	oesophagus
26	chr15:74843400-74862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:74843600-74862000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:74843800-74862200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:74844000-74862200	Weak transcription	HSMMtube	muscle
30	chr15:74844000-74862400	Weak transcription	Brain Germinal Matrix	brain
31	chr15:74844200-74861200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:74844600-74862400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:74845000-74863800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:74845400-74861800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr15:74845400-74880200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:74845600-74861800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:74845600-74862200	Weak transcription	Fetal Lung	lung
38	chr15:74845600-74876200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:74845800-74861800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:74845800-74864600	Weak transcription	Dnd41	blood
41	chr15:74845800-74890400	Weak transcription	A549	lung
42	chr15:74846000-74861800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:74847800-74862000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr15:74850200-74865400	Weak transcription	NHEK	skin
45	chr15:74851200-74875400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:74851600-74865200	Weak transcription	Small Intestine	intestine
47	chr15:74851800-74861400	Weak transcription	Fetal Brain Female	brain
48	chr15:74851800-74887800	Strong transcription	GM12878-XiMat	blood
49	chr15:74853400-74862600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:74854800-74888600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links