Variant report

Variant	rs12439113
Chromosome Location	chr15:74856147-74856148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74855746..74857619-chr15:74857871..74860921,3	MCF-7	breast:
2	chr15:74835921..74837918-chr15:74855388..74858238,2	K562	blood:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1030889	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10459601	0.84[YRI][hapmap];0.80[AMR][1000 genomes]
rs10459648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851871	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10851873	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11072488	0.81[EUR][1000 genomes]
rs11072489	0.88[YRI][hapmap]
rs11072490	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11072492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11072494	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072496	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11072497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11072498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11629749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11629946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11854226	0.86[EUR][1000 genomes]
rs11854461	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11855521	0.83[EUR][1000 genomes]
rs11856543	0.80[EUR][1000 genomes]
rs11857192	0.80[AMR][1000 genomes]
rs11857328	0.86[EUR][1000 genomes]
rs12437519	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12439505	0.83[EUR][1000 genomes]
rs12441932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12442013	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12442097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12591603	0.88[EUR][1000 genomes]
rs12592906	0.83[EUR][1000 genomes]
rs12594447	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595017	0.83[EUR][1000 genomes]
rs12909573	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16969247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs16969393	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs16969612	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1821847	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1821848	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866113	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2068982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2198843	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs2289187	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs2289188	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2415241	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2415242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2415245	0.83[ASN][1000 genomes]
rs35752918	0.83[EUR][1000 genomes]
rs3985310	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4073149	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs4261483	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4278699	0.87[EUR][1000 genomes]
rs4324083	0.82[EUR][1000 genomes]
rs4886599	0.83[EUR][1000 genomes]
rs4886601	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4887150	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4887151	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4887152	0.91[CEU][hapmap]
rs4887153	0.83[EUR][1000 genomes]
rs4887154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs4887155	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4887156	0.80[AMR][1000 genomes]
rs4887158	0.80[AMR][1000 genomes]
rs4887159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887160	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4887162	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55662551	0.83[EUR][1000 genomes]
rs56367313	0.83[EUR][1000 genomes]
rs56369998	0.85[EUR][1000 genomes]
rs57271230	0.83[EUR][1000 genomes]
rs58473469	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59665282	0.80[AMR][1000 genomes]
rs6495103	0.80[EUR][1000 genomes]
rs6495104	0.84[YRI][hapmap]
rs6495105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6495106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6495108	0.88[EUR][1000 genomes]
rs6495109	0.88[EUR][1000 genomes]
rs6495112	0.84[YRI][hapmap];0.80[AMR][1000 genomes]
rs6495115	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6495117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495119	0.84[YRI][hapmap]
rs6495121	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7161903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7163775	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7166656	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7166701	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs7167655	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7171838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173006	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7175512	0.80[AMR][1000 genomes]
rs7176095	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7176491	0.81[ASN][1000 genomes]
rs7177140	0.83[EUR][1000 genomes]
rs7177407	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178219	0.88[EUR][1000 genomes]
rs7178568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs74025818	0.86[ASN][1000 genomes]
rs7497342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs8023479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8023786	0.80[AMR][1000 genomes]
rs8023865	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025976	0.84[EUR][1000 genomes]
rs8026181	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8026923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8028163	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8028430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8028893	0.80[AMR][1000 genomes]
rs8029099	0.80[EUR][1000 genomes]
rs8029116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8029215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8036030	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs8036636	0.92[AMR][1000 genomes]
rs8037074	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8037211	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8037436	0.88[EUR][1000 genomes]
rs8037714	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8038730	0.87[EUR][1000 genomes]
rs8040745	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8041030	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8041807	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8042832	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8043082	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9635320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9672559	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74839000-74863400	Weak transcription	Gastric	stomach
2	chr15:74839000-74863600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74839200-74856400	Weak transcription	Fetal Kidney	kidney
4	chr15:74839200-74859200	Weak transcription	HepG2	liver
5	chr15:74839200-74860800	Weak transcription	Colonic Mucosa	Colon
6	chr15:74839200-74862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:74839200-74865200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:74839200-74866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:74839200-74866800	Weak transcription	Pancreas	Pancrea
10	chr15:74839400-74865800	Weak transcription	HUVEC	blood vessel
11	chr15:74839400-74880600	Weak transcription	Hela-S3	cervix
12	chr15:74839600-74862400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:74840000-74862000	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
15	chr15:74840800-74862200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:74841000-74862000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:74841000-74862000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:74841200-74857800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:74841200-74859400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:74841200-74862000	Weak transcription	Brain Substantia Nigra	brain
21	chr15:74841200-74862200	Weak transcription	Brain Angular Gyrus	brain
22	chr15:74841200-74862400	Weak transcription	Left Ventricle	heart
23	chr15:74841200-74862600	Weak transcription	Right Ventricle	heart
24	chr15:74841400-74857800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:74841400-74861800	Weak transcription	Thymus	Thymus
26	chr15:74842400-74862000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:74842400-74865000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr15:74842600-74862000	Weak transcription	NH-A	brain
29	chr15:74843200-74862000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:74843200-74865600	Weak transcription	Esophagus	oesophagus
31	chr15:74843400-74857600	Weak transcription	Fetal Muscle Leg	muscle
32	chr15:74843400-74857800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:74843400-74862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:74843600-74862000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:74843800-74862200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr15:74844000-74862200	Weak transcription	HSMMtube	muscle
37	chr15:74844000-74862400	Weak transcription	Brain Germinal Matrix	brain
38	chr15:74844200-74861200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:74844600-74862400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:74845000-74863800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:74845400-74859200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:74845400-74861800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr15:74845400-74880200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:74845600-74859200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:74845600-74859400	Weak transcription	Fetal Intestine Large	intestine
46	chr15:74845600-74861800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:74845600-74862200	Weak transcription	Fetal Lung	lung
48	chr15:74845600-74876200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:74845800-74856200	Weak transcription	K562	blood
50	chr15:74845800-74859600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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