Variant report

Variant	rs8026181
Chromosome Location	chr15:74818926-74818927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74814820..74820281-chr15:74822115..74824937,6	MCF-7	breast:
2	chr15:74817985..74820137-chr15:74821769..74824391,2	MCF-7	breast:
3	chr15:74818058..74820598-chr15:74821407..74823908,2	K562	blood:
4	chr15:74797904..74799554-chr15:74816745..74819430,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10459648	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11072488	0.84[EUR][1000 genomes]
rs11072490	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11072492	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072493	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11072494	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11072495	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11629946	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11852291	0.81[EUR][1000 genomes]
rs11854226	0.88[EUR][1000 genomes]
rs11855521	0.86[EUR][1000 genomes]
rs11856543	0.82[EUR][1000 genomes]
rs11857328	0.88[EUR][1000 genomes]
rs12437519	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12439113	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12439505	0.86[EUR][1000 genomes]
rs12441932	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12442013	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12442097	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12591603	0.90[EUR][1000 genomes]
rs12592906	0.86[EUR][1000 genomes]
rs12594447	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12595017	0.86[EUR][1000 genomes]
rs12909573	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16969247	0.85[EUR][1000 genomes]
rs16969612	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1821847	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1821848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2068982	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2289187	0.82[EUR][1000 genomes]
rs2415241	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2415242	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35752918	0.86[EUR][1000 genomes]
rs4077703	0.81[EUR][1000 genomes]
rs4261483	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4278699	0.89[EUR][1000 genomes]
rs4324083	0.85[EUR][1000 genomes]
rs4544202	0.81[EUR][1000 genomes]
rs4886599	0.86[EUR][1000 genomes]
rs4886601	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4887152	0.80[EUR][1000 genomes]
rs4887153	0.86[EUR][1000 genomes]
rs4887154	0.88[EUR][1000 genomes]
rs4887155	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4887159	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4887160	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4887162	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4887163	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4887166	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55662551	0.86[EUR][1000 genomes]
rs56367313	0.86[EUR][1000 genomes]
rs56369998	0.87[EUR][1000 genomes]
rs57271230	0.86[EUR][1000 genomes]
rs58473469	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6495103	0.82[EUR][1000 genomes]
rs6495105	0.81[EUR][1000 genomes]
rs6495108	0.90[EUR][1000 genomes]
rs6495109	0.90[EUR][1000 genomes]
rs6495115	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495117	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6495118	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7163775	0.82[EUR][1000 genomes]
rs7166656	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7166701	0.82[EUR][1000 genomes]
rs7167655	0.93[EUR][1000 genomes]
rs7169985	0.81[EUR][1000 genomes]
rs7171838	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7173006	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7176095	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7176491	0.80[ASN][1000 genomes]
rs7177140	0.86[EUR][1000 genomes]
rs7177407	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7178219	0.90[EUR][1000 genomes]
rs7178568	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs74025818	0.80[AMR][1000 genomes]
rs8023479	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8023865	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8025976	0.82[EUR][1000 genomes]
rs8026923	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8027066	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8028163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8028430	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8029099	0.82[EUR][1000 genomes]
rs8029116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8029215	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8033841	0.81[EUR][1000 genomes]
rs8036636	0.93[AMR][1000 genomes]
rs8037074	0.83[AMR][1000 genomes]
rs8037211	0.81[EUR][1000 genomes]
rs8037436	0.90[EUR][1000 genomes]
rs8037714	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8038730	0.89[EUR][1000 genomes]
rs8040745	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8041030	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8041807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8042832	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8043082	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9635320	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74804800-74821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:74815400-74819400	Enhancers	HMEC	breast
3	chr15:74815800-74819400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:74815800-74819600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:74817000-74822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:74817400-74819000	Enhancers	NH-A	brain
7	chr15:74817600-74819000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:74817600-74819000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:74817600-74819400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:74818000-74822400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:74818000-74822400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:74818000-74823400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:74818200-74823200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:74818200-74823200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
16	chr15:74818400-74819400	Enhancers	NHEK	skin
17	chr15:74818400-74821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:74818400-74821800	Weak transcription	Placenta	Placenta
19	chr15:74818400-74823200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:74818600-74822400	Weak transcription	HSMM	muscle
21	chr15:74818600-74822400	Weak transcription	NHLF	lung
22	chr15:74818600-74822600	Weak transcription	Hela-S3	cervix
23	chr15:74818600-74823200	Weak transcription	A549	lung
24	chr15:74818600-74823200	Weak transcription	NHDF-Ad	bronchial
25	chr15:74818600-74823600	Weak transcription	HSMMtube	muscle
26	chr15:74818800-74819200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:74818800-74821400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:74818800-74821800	Weak transcription	Osteobl	bone
29	chr15:74818800-74822200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:74818800-74822400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:74818800-74822400	Weak transcription	HUVEC	blood vessel

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