Variant report

Variant	rs11856543
Chromosome Location	chr15:74758529-74758530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1078011	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10851871	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11072488	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11072489	0.85[AFR][1000 genomes]
rs11072490	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072492	0.81[EUR][1000 genomes]
rs11852291	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11854226	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11854461	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11855521	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857328	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439113	0.80[EUR][1000 genomes]
rs12439178	0.88[AMR][1000 genomes]
rs12439505	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440645	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12440654	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442097	0.80[EUR][1000 genomes]
rs12591603	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592493	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592512	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12592906	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594766	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595017	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909573	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969247	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969393	0.86[ASN][1000 genomes]
rs16969612	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1821847	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1866113	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1866114	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2012008	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2099593	0.81[AFR][1000 genomes]
rs2289187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289188	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2415242	0.80[EUR][1000 genomes]
rs2415243	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28362902	0.86[AMR][1000 genomes]
rs2899826	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35752918	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3985310	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077703	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4261483	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4278699	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4324083	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4369610	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4372642	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4468560	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4544202	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886599	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887147	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887148	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4887149	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4887150	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887151	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887152	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4887153	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887154	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4887155	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55662551	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56367313	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369998	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57271230	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59946128	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6495101	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495102	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6495103	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495105	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495106	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6495108	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495109	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7161990	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7163775	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7166656	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7167655	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7169985	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7173006	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7176491	0.84[ASN][1000 genomes]
rs7177140	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177407	0.80[EUR][1000 genomes]
rs7178219	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs750608	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8025655	0.80[ASN][1000 genomes]
rs8026181	0.82[EUR][1000 genomes]
rs8026923	0.80[EUR][1000 genomes]
rs8027066	0.80[EUR][1000 genomes]
rs8028163	0.82[EUR][1000 genomes]
rs8028430	0.80[EUR][1000 genomes]
rs8029099	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8029116	0.82[EUR][1000 genomes]
rs8033841	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036030	0.80[ASN][1000 genomes]
rs8037211	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8037436	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8038730	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8039977	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8041030	0.82[EUR][1000 genomes]
rs8041068	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8041121	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8041807	0.80[EUR][1000 genomes]
rs8042323	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8042832	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8043082	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754000-74767000	Weak transcription	Spleen	Spleen
2	chr15:74754200-74760400	Weak transcription	Ovary	ovary
3	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
4	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:74754600-74759000	Weak transcription	Fetal Stomach	stomach
6	chr15:74754600-74760400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:74754600-74760600	Weak transcription	Primary T cells from cord blood	blood
8	chr15:74754600-74760600	Weak transcription	HSMM	muscle
9	chr15:74754600-74760800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:74754600-74760800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:74754600-74760800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:74754600-74762600	Weak transcription	Pancreas	Pancrea
13	chr15:74754600-74762800	Weak transcription	Right Ventricle	heart
14	chr15:74754600-74764400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:74754600-74766400	Weak transcription	Fetal Kidney	kidney
16	chr15:74754600-74766800	Weak transcription	Lung	lung
17	chr15:74754600-74767000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:74754600-74767200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:74754600-74769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:74754600-74770800	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:74754600-74773000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:74754600-74773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:74754600-74773800	Weak transcription	Gastric	stomach
24	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
25	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
26	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
29	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
31	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:74754800-74758800	Weak transcription	Osteobl	bone
35	chr15:74754800-74760600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:74754800-74760800	Weak transcription	Adipose Nuclei	Adipose
37	chr15:74754800-74762200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:74754800-74765600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr15:74754800-74768200	Weak transcription	NHDF-Ad	bronchial
40	chr15:74754800-74770000	Weak transcription	NHLF	lung
41	chr15:74754800-74771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:74755000-74760800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:74755200-74760200	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:74755200-74760200	Weak transcription	Fetal Thymus	thymus
46	chr15:74755200-74760400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:74755200-74760400	Weak transcription	Fetal Intestine Small	intestine
48	chr15:74755200-74760600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:74755200-74760600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:74755200-74760600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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