Variant report

Variant	rs11852291
Chromosome Location	chr15:74749965-74749966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74747882..74750371-chr15:74751951..74754278,2	MCF-7	breast:
2	chr15:74749825..74755412-chr15:74831975..74836764,7	K562	blood:
3	chr15:74747946..74750473-chr15:74758727..74761732,3	K562	blood:
4	chr15:74665429..74667664-chr15:74747982..74750255,2	MCF-7	breast:
5	chr15:74749538..74751818-chr15:74752956..74754902,2	K562	blood:

Variant related genes	Relation type
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1030889	0.82[ASN][1000 genomes]
rs1078011	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10851871	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11072488	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072490	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11072492	0.80[EUR][1000 genomes]
rs11854025	0.81[AMR][1000 genomes]
rs11854226	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11854461	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11855521	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11856543	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11857328	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12439178	0.83[AMR][1000 genomes]
rs12439505	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440645	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440654	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591603	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592493	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592512	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12592906	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594766	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12595017	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12909573	0.84[EUR][1000 genomes]
rs16969247	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16969393	0.82[ASN][1000 genomes]
rs16969612	0.84[EUR][1000 genomes]
rs1821847	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1866113	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012008	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2017998	0.81[ASN][1000 genomes]
rs2289187	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28362902	0.82[AMR][1000 genomes]
rs35752918	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3985310	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4077703	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4261483	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4278699	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4324083	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4369610	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4372642	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4468560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544202	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4886599	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887148	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887149	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887153	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887154	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887155	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55662551	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56367313	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56369998	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57271230	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59946128	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6495101	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495102	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6495103	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495105	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495106	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6495108	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495109	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7163775	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166656	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7166701	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167655	0.84[EUR][1000 genomes]
rs7169985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173006	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7176491	0.80[ASN][1000 genomes]
rs7177140	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178219	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8025655	0.83[ASN][1000 genomes]
rs8026181	0.81[EUR][1000 genomes]
rs8028163	0.81[EUR][1000 genomes]
rs8029099	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8029116	0.81[EUR][1000 genomes]
rs8033841	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8036030	0.83[ASN][1000 genomes]
rs8037211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037436	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8038730	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8039977	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8041030	0.81[EUR][1000 genomes]
rs8042832	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:74735200-74752600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:74735600-74751200	Strong transcription	Thymus	Thymus
4	chr15:74736000-74752400	Weak transcription	Fetal Brain Male	brain
5	chr15:74736200-74751200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:74736400-74751400	Strong transcription	Fetal Muscle Leg	muscle
7	chr15:74736600-74751000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:74736600-74751200	Strong transcription	Fetal Intestine Small	intestine
9	chr15:74736600-74751400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:74736600-74751400	Strong transcription	Fetal Stomach	stomach
11	chr15:74736800-74751200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:74736800-74751200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:74736800-74751400	Strong transcription	Stomach Smooth Muscle	stomach
14	chr15:74736800-74751600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:74737000-74750000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:74737000-74751200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:74737000-74751400	Strong transcription	Fetal Intestine Large	intestine
18	chr15:74737000-74751600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr15:74737200-74750800	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:74737200-74751200	Strong transcription	Primary B cells from peripheral blood	blood
21	chr15:74737800-74752600	Weak transcription	HUVEC	blood vessel
22	chr15:74741800-74752400	Weak transcription	HMEC	breast
23	chr15:74742000-74752600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:74742400-74752000	Weak transcription	Small Intestine	intestine
25	chr15:74742800-74752600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:74743000-74752600	Weak transcription	Psoas Muscle	Psoas
27	chr15:74743200-74752600	Weak transcription	Stomach Mucosa	stomach
28	chr15:74743600-74752600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:74743600-74753000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:74744800-74752400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr15:74744800-74752600	Weak transcription	NHLF	lung
32	chr15:74744800-74753000	Weak transcription	Esophagus	oesophagus
33	chr15:74745000-74751200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:74745000-74752600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:74745000-74753000	Weak transcription	Aorta	Aorta
36	chr15:74745200-74751000	Strong transcription	Placenta	Placenta
37	chr15:74745200-74752400	Weak transcription	Hela-S3	cervix
38	chr15:74745600-74752000	Weak transcription	Right Ventricle	heart
39	chr15:74746000-74752600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:74746000-74752600	Weak transcription	Colonic Mucosa	Colon
41	chr15:74746000-74752600	Weak transcription	Gastric	stomach
42	chr15:74746200-74750600	Weak transcription	HepG2	liver
43	chr15:74746400-74751200	Strong transcription	Fetal Thymus	thymus
44	chr15:74746400-74752400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:74746600-74751200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:74746600-74752600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:74746600-74752600	Weak transcription	Fetal Heart	heart
48	chr15:74746600-74752600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:74746600-74752600	Weak transcription	Osteobl	bone
50	chr15:74746600-74752800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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