Variant report

Variant	rs8029099
Chromosome Location	chr15:74766770-74766771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74686172..74688047-chr15:74766042..74767580,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1078011	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10851871	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11072488	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072490	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072492	0.81[EUR][1000 genomes]
rs11852291	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11854226	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11854461	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11855521	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11856543	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11857328	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12439113	0.80[EUR][1000 genomes]
rs12439178	0.83[AMR][1000 genomes]
rs12439505	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440645	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440654	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12442097	0.80[EUR][1000 genomes]
rs12591603	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12592493	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12592512	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12592906	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12594766	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12595017	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12909573	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16969247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16969393	0.84[ASN][1000 genomes]
rs16969612	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1821847	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1866113	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2012008	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2289187	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289188	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415242	0.80[EUR][1000 genomes]
rs28362902	0.80[AMR][1000 genomes]
rs35752918	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3985310	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4077703	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4261483	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4278699	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4324083	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4369610	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4372642	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4468560	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4544202	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886599	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4887147	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4887148	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4887149	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4887150	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4887151	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4887152	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887153	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4887154	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887155	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55662551	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56367313	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56369998	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57271230	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59946128	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6495101	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495102	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6495103	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495105	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495106	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6495108	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495109	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7163775	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7166656	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7166701	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7167655	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7169985	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173006	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7176491	0.82[ASN][1000 genomes]
rs7177140	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7177407	0.80[EUR][1000 genomes]
rs7178219	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8023865	0.80[EUR][1000 genomes]
rs8026181	0.82[EUR][1000 genomes]
rs8026923	0.80[EUR][1000 genomes]
rs8027066	0.80[EUR][1000 genomes]
rs8028163	0.82[EUR][1000 genomes]
rs8028430	0.80[EUR][1000 genomes]
rs8029116	0.82[EUR][1000 genomes]
rs8033841	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8037211	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037436	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8038730	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8039977	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041030	0.82[EUR][1000 genomes]
rs8041807	0.80[EUR][1000 genomes]
rs8042832	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8043082	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754000-74767000	Weak transcription	Spleen	Spleen
2	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
3	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:74754600-74766800	Weak transcription	Lung	lung
5	chr15:74754600-74767000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:74754600-74767200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:74754600-74769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:74754600-74770800	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:74754600-74773000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:74754600-74773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:74754600-74773800	Weak transcription	Gastric	stomach
12	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
13	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
14	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
17	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
19	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:74754800-74768200	Weak transcription	NHDF-Ad	bronchial
23	chr15:74754800-74770000	Weak transcription	NHLF	lung
24	chr15:74754800-74771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:74755200-74767000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:74755200-74768200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:74755200-74773400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:74755200-74775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:74755200-74776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:74755200-74789200	Weak transcription	NHEK	skin
32	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:74755400-74768400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:74755400-74770800	Weak transcription	Fetal Lung	lung
36	chr15:74755400-74775000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:74755600-74768400	Weak transcription	HMEC	breast
39	chr15:74755800-74770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:74756800-74781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:74757000-74782000	Weak transcription	Primary B cells from cord blood	blood
42	chr15:74757200-74766800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:74757200-74782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:74757400-74770000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:74757800-74768000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:74759000-74766800	Strong transcription	Fetal Stomach	stomach
47	chr15:74760200-74767800	Strong transcription	Fetal Thymus	thymus
48	chr15:74760600-74769600	Strong transcription	Primary T cells from cord blood	blood
49	chr15:74760800-74767600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:74760800-74785600	Weak transcription	Ovary	ovary

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