Variant report

Variant	rs8028163
Chromosome Location	chr15:74822701-74822702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74822427..74825765-chr15:74831292..74834825,5	MCF-7	breast:
2	chr15:74814820..74820281-chr15:74822115..74824937,6	MCF-7	breast:
3	chr15:74822266..74825721-chr15:74827870..74831013,4	K562	blood:
4	chr15:74818058..74820598-chr15:74821407..74823908,2	K562	blood:
5	chr15:74802902..74805887-chr15:74821101..74823845,2	MCF-7	breast:
6	chr15:74817985..74820137-chr15:74821769..74824391,2	MCF-7	breast:
7	chr15:74822467..74830075-chr15:74830932..74835759,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10459648	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072488	0.84[EUR][1000 genomes]
rs11072490	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072493	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11072494	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072495	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072496	0.81[ASN][1000 genomes]
rs11072497	0.81[ASN][1000 genomes]
rs11072498	0.81[ASN][1000 genomes]
rs11629749	0.80[ASN][1000 genomes]
rs11629946	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11852291	0.81[EUR][1000 genomes]
rs11854226	0.88[EUR][1000 genomes]
rs11855521	0.86[EUR][1000 genomes]
rs11856543	0.82[EUR][1000 genomes]
rs11857328	0.88[EUR][1000 genomes]
rs12437519	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12439113	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439505	0.86[EUR][1000 genomes]
rs12441932	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12442013	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442097	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591603	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12592906	0.86[EUR][1000 genomes]
rs12594447	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595017	0.86[EUR][1000 genomes]
rs12909573	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969247	0.85[EUR][1000 genomes]
rs16969612	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1821847	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1821848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2068982	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2289187	0.82[EUR][1000 genomes]
rs2415241	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415242	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35752918	0.86[EUR][1000 genomes]
rs4073149	0.82[AFR][1000 genomes]
rs4077703	0.81[EUR][1000 genomes]
rs4261483	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4278699	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4324083	0.85[EUR][1000 genomes]
rs4544202	0.81[EUR][1000 genomes]
rs4886599	0.86[EUR][1000 genomes]
rs4886601	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4887152	0.80[EUR][1000 genomes]
rs4887153	0.86[EUR][1000 genomes]
rs4887154	0.88[EUR][1000 genomes]
rs4887155	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4887159	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887160	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887162	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4887163	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4887166	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55662551	0.86[EUR][1000 genomes]
rs56367313	0.86[EUR][1000 genomes]
rs56369998	0.87[EUR][1000 genomes]
rs57271230	0.86[EUR][1000 genomes]
rs58473469	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495103	0.82[EUR][1000 genomes]
rs6495105	0.81[EUR][1000 genomes]
rs6495108	0.90[EUR][1000 genomes]
rs6495109	0.90[EUR][1000 genomes]
rs6495115	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495117	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495118	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7161903	0.81[ASN][1000 genomes]
rs7163775	0.82[EUR][1000 genomes]
rs7166656	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166701	0.82[EUR][1000 genomes]
rs7167655	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7169985	0.81[EUR][1000 genomes]
rs7171838	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173006	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7176095	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7176491	0.84[ASN][1000 genomes]
rs7177140	0.86[EUR][1000 genomes]
rs7177407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178219	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7178568	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs74025818	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7497342	0.81[ASN][1000 genomes]
rs8023479	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8023865	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025976	0.82[EUR][1000 genomes]
rs8026181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8026923	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027066	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8028430	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8029099	0.82[EUR][1000 genomes]
rs8029116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029215	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8033841	0.81[EUR][1000 genomes]
rs8036636	0.93[AMR][1000 genomes]
rs8037074	0.83[AMR][1000 genomes]
rs8037211	0.81[EUR][1000 genomes]
rs8037436	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs8037714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038730	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8040745	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8041030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8041807	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8042832	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8043082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9635320	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74817000-74822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:74818000-74823400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:74818200-74823200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:74818200-74823200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
6	chr15:74818400-74823200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:74818600-74823200	Weak transcription	A549	lung
8	chr15:74818600-74823200	Weak transcription	NHDF-Ad	bronchial
9	chr15:74818600-74823600	Weak transcription	HSMMtube	muscle
10	chr15:74819000-74823200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:74819600-74823200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:74821000-74824200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:74821200-74824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:74821400-74823800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:74821400-74824600	Enhancers	NH-A	brain
16	chr15:74821800-74823400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr15:74821800-74824400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:74821800-74824400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:74821800-74824600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:74821800-74824600	Enhancers	Placenta	Placenta
21	chr15:74821800-74824600	Enhancers	HMEC	breast
22	chr15:74821800-74824600	Enhancers	Osteobl	bone
23	chr15:74822000-74823000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr15:74822000-74824600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
26	chr15:74822200-74822800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr15:74822200-74823400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:74822200-74824400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:74822400-74822800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:74822400-74822800	Enhancers	HUVEC	blood vessel
31	chr15:74822400-74823600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:74822400-74823600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr15:74822400-74823600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr15:74822400-74823600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr15:74822400-74823600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr15:74822400-74824000	Enhancers	H9 Cell Line	embryonic stem cell
37	chr15:74822400-74824400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:74822400-74824400	Enhancers	NHLF	lung
39	chr15:74822400-74824600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:74822400-74824600	Enhancers	NHEK	skin
41	chr15:74822400-74824800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr15:74822600-74822800	Enhancers	GM12878-XiMat	blood
43	chr15:74822600-74823000	Weak transcription	HSMM	muscle
44	chr15:74822600-74824400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:74822600-74824400	Enhancers	Hela-S3	cervix

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