Variant report

Variant	rs8037714
Chromosome Location	chr15:74826318-74826319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74823864..74826848-chr15:74827847..74829990,2	MCF-7	breast:
2	chr15:74822467..74830075-chr15:74830932..74835759,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10459648	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072490	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072492	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072493	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11072494	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072495	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072496	0.81[ASN][1000 genomes]
rs11072497	0.81[ASN][1000 genomes]
rs11072498	0.81[ASN][1000 genomes]
rs11629749	0.80[ASN][1000 genomes]
rs11629946	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11854226	0.83[EUR][1000 genomes]
rs11855521	0.81[EUR][1000 genomes]
rs11857328	0.83[EUR][1000 genomes]
rs12437519	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12439113	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439505	0.81[EUR][1000 genomes]
rs12441932	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12442013	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442097	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591603	0.86[EUR][1000 genomes]
rs12592906	0.81[EUR][1000 genomes]
rs12594447	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12595017	0.81[EUR][1000 genomes]
rs12909573	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969247	0.80[EUR][1000 genomes]
rs16969612	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1821847	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1821848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2068982	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2415241	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415242	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35752918	0.81[EUR][1000 genomes]
rs4073149	0.83[AFR][1000 genomes]
rs4261483	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4278699	0.84[EUR][1000 genomes]
rs4324083	0.80[EUR][1000 genomes]
rs4886599	0.81[EUR][1000 genomes]
rs4886601	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4887153	0.81[EUR][1000 genomes]
rs4887154	0.83[EUR][1000 genomes]
rs4887155	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4887159	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887160	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887162	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4887163	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4887166	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55662551	0.81[EUR][1000 genomes]
rs56367313	0.81[EUR][1000 genomes]
rs56369998	0.82[EUR][1000 genomes]
rs57271230	0.81[EUR][1000 genomes]
rs58473469	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495105	0.81[EUR][1000 genomes]
rs6495108	0.86[EUR][1000 genomes]
rs6495109	0.86[EUR][1000 genomes]
rs6495115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495117	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495118	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7161903	0.81[ASN][1000 genomes]
rs7166656	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7167655	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7171838	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173006	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7176095	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7176491	0.84[ASN][1000 genomes]
rs7177140	0.81[EUR][1000 genomes]
rs7177407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178219	0.86[EUR][1000 genomes]
rs7178568	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs74025818	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7497342	0.81[ASN][1000 genomes]
rs8023479	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8023865	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025976	0.81[EUR][1000 genomes]
rs8026181	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8026923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027066	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8028163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8028430	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8029116	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8029215	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8036636	0.93[AMR][1000 genomes]
rs8037074	0.83[AMR][1000 genomes]
rs8037436	0.86[EUR][1000 genomes]
rs8038730	0.84[EUR][1000 genomes]
rs8040745	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8041030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8041807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042832	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8043082	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9635320	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
2	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
3	chr15:74822800-74827200	Weak transcription	GM12878-XiMat	blood
4	chr15:74823600-74828000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:74823800-74827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:74824000-74832000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74824000-74832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74824000-74832400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:74824200-74827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:74824200-74832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:74824400-74827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:74824400-74827600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:74824400-74827600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:74824400-74827600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:74824400-74831800	Weak transcription	NHLF	lung
16	chr15:74824400-74832200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:74824400-74832400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:74824600-74827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:74824600-74827200	Weak transcription	HMEC	breast
20	chr15:74824600-74827200	Weak transcription	NHEK	skin
21	chr15:74824600-74827600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:74824600-74827600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:74824600-74827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:74824600-74827600	Weak transcription	Osteobl	bone
25	chr15:74824600-74827800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:74824600-74828000	Weak transcription	NH-A	brain
27	chr15:74824600-74829600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:74824600-74829800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:74824600-74832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:74824600-74832200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:74824600-74832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr15:74824800-74831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:74824800-74832000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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