Variant report

Variant	rs7169985
Chromosome Location	chr15:74745778-74745779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74712461..74714565-chr15:74744762..74746348,2	MCF-7	breast:
2	chr15:74718075..74720590-chr15:74744935..74747887,2	K562	blood:
3	chr15:74744211..74746229-chr15:74751385..74754144,2	MCF-7	breast:
4	chr15:74743919..74746134-chr15:74906513..74908023,2	MCF-7	breast:
5	chr15:74745747..74749523-chr15:74749987..74753880,5	K562	blood:

Variant related genes	Relation type
ENSG00000260919	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1030889	0.82[ASN][1000 genomes]
rs1078011	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10851871	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11072488	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072490	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11072492	0.80[EUR][1000 genomes]
rs11852291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854025	0.81[AMR][1000 genomes]
rs11854226	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11854461	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11855521	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11856543	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11857328	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12439178	0.83[AMR][1000 genomes]
rs12439505	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440645	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440654	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591603	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592493	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592512	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12592906	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594766	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12595017	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12909573	0.84[EUR][1000 genomes]
rs16969247	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16969393	0.82[ASN][1000 genomes]
rs16969612	0.84[EUR][1000 genomes]
rs1821847	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1866113	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012008	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2017998	0.81[ASN][1000 genomes]
rs2289187	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28362902	0.82[AMR][1000 genomes]
rs35752918	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3985310	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4077703	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4261483	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4278699	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4324083	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4369610	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4372642	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4468560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544202	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4886599	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887148	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887149	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887153	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887154	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887155	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55662551	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56367313	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56369998	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57271230	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59946128	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6495101	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495102	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6495103	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495105	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495106	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6495108	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495109	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7163775	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166656	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7166701	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167655	0.84[EUR][1000 genomes]
rs7173006	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7176491	0.80[ASN][1000 genomes]
rs7177140	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178219	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8025655	0.83[ASN][1000 genomes]
rs8026181	0.81[EUR][1000 genomes]
rs8028163	0.81[EUR][1000 genomes]
rs8029099	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8029116	0.81[EUR][1000 genomes]
rs8033841	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8036030	0.83[ASN][1000 genomes]
rs8037211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037436	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8038730	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8039977	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8041030	0.81[EUR][1000 genomes]
rs8042832	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:74727200-74747200	Weak transcription	NHDF-Ad	bronchial
3	chr15:74735200-74752600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:74735600-74751200	Strong transcription	Thymus	Thymus
5	chr15:74735800-74745800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:74736000-74752400	Weak transcription	Fetal Brain Male	brain
7	chr15:74736200-74751200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:74736400-74751400	Strong transcription	Fetal Muscle Leg	muscle
9	chr15:74736600-74745800	Strong transcription	Fetal Thymus	thymus
10	chr15:74736600-74746000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:74736600-74746200	Strong transcription	Primary T cells from cord blood	blood
12	chr15:74736600-74746400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:74736600-74746400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr15:74736600-74746400	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:74736600-74746400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:74736600-74746600	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr15:74736600-74747800	Strong transcription	Fetal Brain Female	brain
18	chr15:74736600-74749800	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:74736600-74751000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:74736600-74751200	Strong transcription	Fetal Intestine Small	intestine
21	chr15:74736600-74751400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:74736600-74751400	Strong transcription	Fetal Stomach	stomach
23	chr15:74736800-74745800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:74736800-74746200	Strong transcription	Primary hematopoietic stem cells	blood
25	chr15:74736800-74747400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:74736800-74747600	Strong transcription	Ovary	ovary
27	chr15:74736800-74748000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:74736800-74749000	Strong transcription	Primary B cells from cord blood	blood
29	chr15:74736800-74749400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:74736800-74749600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:74736800-74751200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:74736800-74751200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:74736800-74751400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr15:74736800-74751600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:74737000-74746200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:74737000-74749200	Strong transcription	Brain Germinal Matrix	brain
37	chr15:74737000-74749400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:74737000-74750000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:74737000-74751200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:74737000-74751400	Strong transcription	Fetal Intestine Large	intestine
41	chr15:74737000-74751600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr15:74737200-74746000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr15:74737200-74746000	Strong transcription	Dnd41	blood
44	chr15:74737200-74746400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:74737200-74746800	Weak transcription	Right Atrium	heart
46	chr15:74737200-74750800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:74737200-74751200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr15:74737400-74745800	Strong transcription	Gastric	stomach
49	chr15:74737400-74745800	Strong transcription	Osteobl	bone
50	chr15:74737400-74747600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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