Variant report

Variant	rs4887151
Chromosome Location	chr15:74737467-74737468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74735172..74738041-chr15:74740466..74742650,4	K562	blood:
2	chr15:74735765..74738345-chr15:74742759..74744562,2	K562	blood:
3	chr15:74734787..74738096-chr15:74738191..74740451,3	K562	blood:
4	chr15:74724929..74726985-chr15:74737428..74739824,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1030889	0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10459648	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1078011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851871	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10851873	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs11072488	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072492	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11072493	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11072494	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11072495	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11072496	0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11629749	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11629946	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11852291	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11854025	0.81[AMR][1000 genomes]
rs11854226	0.85[ASN][1000 genomes]
rs11854461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855521	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856543	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857328	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12439113	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12439178	0.83[AMR][1000 genomes]
rs12439505	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12440645	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440654	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12441932	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12442097	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12591603	0.86[ASN][1000 genomes]
rs12592493	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592512	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12592906	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594766	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12595017	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16969247	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16969393	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1866113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1866114	0.80[YRI][hapmap]
rs2012008	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017998	0.84[ASN][1000 genomes]
rs2068982	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2289187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2289188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415242	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28362902	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35752918	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3985310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077703	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4278699	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4324083	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4369610	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4372642	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4468560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4544202	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886599	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4886601	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs4887147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887148	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887149	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887152	1.00[CEU][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4887153	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887154	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4887159	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4887163	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4887166	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs55662551	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56367313	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56369998	0.81[ASN][1000 genomes]
rs57271230	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59946128	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6495101	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6495102	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6495103	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495105	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495106	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6495108	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6495109	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6495116	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6495117	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6495118	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7163775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7166701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7169985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7171838	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7177140	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178219	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7178568	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8023479	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8025655	0.85[ASN][1000 genomes]
rs8026923	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8027066	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs8028430	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8029099	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8029116	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8029215	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8033841	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8036030	0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs8037211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8037436	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8038730	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8039977	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9635320	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726800-74738600	Weak transcription	Fetal Lung	lung
2	chr15:74726800-74740200	Weak transcription	A549	lung
3	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:74727000-74737600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:74727200-74737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:74727200-74740600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:74727200-74747200	Weak transcription	NHDF-Ad	bronchial
8	chr15:74727600-74739400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:74731200-74737600	Weak transcription	NHEK	skin
10	chr15:74731200-74738200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:74731200-74741200	Weak transcription	HMEC	breast
12	chr15:74733800-74745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:74734200-74737800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:74734400-74737600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:74734400-74737600	Weak transcription	Colonic Mucosa	Colon
16	chr15:74734400-74737800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:74735000-74737600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:74735200-74741400	Weak transcription	Psoas Muscle	Psoas
19	chr15:74735200-74752600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:74735400-74739400	Weak transcription	Fetal Kidney	kidney
21	chr15:74735600-74751200	Strong transcription	Thymus	Thymus
22	chr15:74735800-74742000	Weak transcription	K562	blood
23	chr15:74735800-74743200	Weak transcription	Fetal Heart	heart
24	chr15:74735800-74745800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:74736000-74737600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:74736000-74738200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:74736000-74738200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:74736000-74739200	Weak transcription	NH-A	brain
29	chr15:74736000-74740000	Weak transcription	Stomach Mucosa	stomach
30	chr15:74736000-74740400	Weak transcription	Small Intestine	intestine
31	chr15:74736000-74741400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:74736000-74745600	Strong transcription	GM12878-XiMat	blood
33	chr15:74736000-74752400	Weak transcription	Fetal Brain Male	brain
34	chr15:74736200-74739400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:74736200-74751200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:74736400-74751400	Strong transcription	Fetal Muscle Leg	muscle
37	chr15:74736600-74737600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr15:74736600-74737600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
39	chr15:74736600-74737800	Enhancers	HUVEC	blood vessel
40	chr15:74736600-74745000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:74736600-74745000	Strong transcription	Aorta	Aorta
42	chr15:74736600-74745600	Strong transcription	Right Ventricle	heart
43	chr15:74736600-74745800	Strong transcription	Fetal Thymus	thymus
44	chr15:74736600-74746000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:74736600-74746200	Strong transcription	Primary T cells from cord blood	blood
46	chr15:74736600-74746400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:74736600-74746400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr15:74736600-74746400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:74736600-74746400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:74736600-74746600	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links