Variant report

Variant	rs28362902
Chromosome Location	chr15:74712178-74712179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74692322..74695920-chr15:74711238..74714934,4	K562	blood:
2	chr15:74710597..74712982-chr15:75051460..75053643,2	K562	blood:
3	chr15:74711559..74715833-chr15:74724252..74727151,6	K562	blood:
4	chr15:74689719..74694435-chr15:74706184..74713253,9	MCF-7	breast:
5	chr15:74711706..74714244-chr15:74719320..74721195,2	K562	blood:
6	chr15:74698938..74701316-chr15:74711313..74715118,3	MCF-7	breast:
7	chr15:74674587..74678748-chr15:74711681..74714409,4	K562	blood:
8	chr15:74675641..74677310-chr15:74711681..74714409,2	K562	blood:
9	chr15:74706143..74707711-chr15:74709343..74712295,2	K562	blood:
10	chr15:74710571..74713498-chr15:74715208..74717540,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1078011	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11072488	0.81[AMR][1000 genomes]
rs11852291	0.82[AMR][1000 genomes]
rs11854025	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11854461	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11855521	0.84[AMR][1000 genomes]
rs11856543	0.86[AMR][1000 genomes]
rs11857558	0.83[ASN][1000 genomes]
rs12439178	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12439505	0.84[AMR][1000 genomes]
rs12440645	0.83[AMR][1000 genomes]
rs12440654	0.81[AMR][1000 genomes]
rs12592493	0.84[AMR][1000 genomes]
rs12592906	0.84[AMR][1000 genomes]
rs12594766	0.80[AMR][1000 genomes]
rs12595017	0.84[AMR][1000 genomes]
rs16969247	0.80[AMR][1000 genomes]
rs1866113	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2012008	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2017998	0.89[ASN][1000 genomes]
rs2289187	0.86[AMR][1000 genomes]
rs2289188	0.82[AMR][1000 genomes]
rs28362872	0.85[AFR][1000 genomes]
rs28362901	0.82[AMR][1000 genomes]
rs35752918	0.82[AMR][1000 genomes]
rs3985310	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4077703	0.82[AMR][1000 genomes]
rs4468560	0.82[AMR][1000 genomes]
rs4544202	0.80[AMR][1000 genomes]
rs4886599	0.84[AMR][1000 genomes]
rs4887147	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4887150	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4887151	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4887152	0.82[AMR][1000 genomes]
rs4887154	0.84[AMR][1000 genomes]
rs55662551	0.84[AMR][1000 genomes]
rs56367313	0.83[AMR][1000 genomes]
rs57271230	0.83[AMR][1000 genomes]
rs6495101	0.83[AMR][1000 genomes]
rs6495103	0.82[AMR][1000 genomes]
rs6495105	0.83[AMR][1000 genomes]
rs7163775	0.85[AMR][1000 genomes]
rs7166701	0.86[AMR][1000 genomes]
rs7169985	0.82[AMR][1000 genomes]
rs7177140	0.84[AMR][1000 genomes]
rs8025655	0.89[ASN][1000 genomes]
rs8029099	0.80[AMR][1000 genomes]
rs8036030	0.91[ASN][1000 genomes]
rs8037211	0.82[AMR][1000 genomes]
rs8039977	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904353	chr15:74697084-74716609	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904354	chr15:74697084-74722924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
9	nsv904357	chr15:74707993-74716609	Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv904358	chr15:74708461-74716609	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv904359	chr15:74709071-74712937	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv569976	chr15:74709071-74715211	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv904360	chr15:74709071-74728149	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
14	nsv569979	chr15:74709405-74722924	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv904361	chr15:74709975-74712178	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv904362	chr15:74709975-74712937	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv904363	chr15:74709975-74713279	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv904364	chr15:74709975-74728149	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
19	nsv904365	chr15:74710125-74712178	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv904366	chr15:74710125-74716609	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	nsv569982	chr15:74710125-74721969	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	nsv904367	chr15:74710125-74728149	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
23	nsv904368	chr15:74711122-74728149	Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74696200-74712600	Weak transcription	Right Atrium	heart
2	chr15:74696400-74712200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:74697000-74712400	Weak transcription	Fetal Heart	heart
4	chr15:74697000-74712600	Weak transcription	Fetal Lung	lung
5	chr15:74699600-74716600	Weak transcription	Fetal Kidney	kidney
6	chr15:74700000-74713800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:74700600-74712200	Weak transcription	Fetal Brain Male	brain
8	chr15:74700800-74712400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:74701200-74714600	Genic enhancers	Spleen	Spleen
10	chr15:74701400-74712600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:74702000-74712400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:74702200-74715000	Weak transcription	Colonic Mucosa	Colon
13	chr15:74702600-74712200	Strong transcription	NHEK	skin
14	chr15:74702800-74712200	Weak transcription	Pancreas	Pancrea
15	chr15:74703200-74712600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:74703200-74713000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:74703800-74713000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:74705200-74712800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:74706200-74713600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:74706400-74714600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:74706800-74715000	Weak transcription	Aorta	Aorta
22	chr15:74707200-74722400	Weak transcription	Fetal Intestine Small	intestine
23	chr15:74707400-74712200	Genic enhancers	GM12878-XiMat	blood
24	chr15:74707800-74718000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:74708000-74717600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:74708200-74712400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:74708400-74722400	Genic enhancers	Fetal Thymus	thymus
28	chr15:74709000-74713000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr15:74709000-74715400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:74709000-74717600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:74709200-74712600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:74709200-74712600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:74709200-74712800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:74709200-74720200	Weak transcription	Esophagus	oesophagus
35	chr15:74709200-74720800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:74709200-74724800	Weak transcription	Primary T cells from cord blood	blood
37	chr15:74709400-74713800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:74709400-74713800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:74709400-74716000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:74709400-74718000	Enhancers	HSMMtube	muscle
41	chr15:74709600-74712200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:74709600-74714400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:74709600-74718200	Enhancers	HMEC	breast
44	chr15:74709800-74712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:74709800-74713200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr15:74709800-74718000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:74710000-74722800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:74710200-74712200	Weak transcription	Adipose Nuclei	Adipose
49	chr15:74710200-74712400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:74710200-74712400	Weak transcription	Left Ventricle	heart

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