Variant report

Variant	rs2415245
Chromosome Location	chr15:74970432-74970433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74968474..74971809-chr15:75051252..75053617,3	K562	blood:
2	chr15:74963270..74967402-chr15:74970410..74973801,3	K562	blood:

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10459648	0.83[ASN][1000 genomes]
rs11072493	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11072494	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11072495	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11072496	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072497	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072498	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11629749	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11629946	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12437519	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12439113	0.83[ASN][1000 genomes]
rs12441932	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12442013	0.81[ASN][1000 genomes]
rs12442097	0.81[ASN][1000 genomes]
rs1456432	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2068982	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2198843	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2415241	0.82[ASN][1000 genomes]
rs2415242	0.81[ASN][1000 genomes]
rs4886601	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4887159	0.83[ASN][1000 genomes]
rs4887160	0.81[ASN][1000 genomes]
rs4887162	0.92[ASN][1000 genomes]
rs4887163	0.92[ASN][1000 genomes]
rs4887165	0.81[ASN][1000 genomes]
rs4887166	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58473469	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6495115	0.83[ASN][1000 genomes]
rs6495117	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6495118	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6495121	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161903	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7171838	0.83[ASN][1000 genomes]
rs7176095	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7177407	0.81[ASN][1000 genomes]
rs7178568	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs74025818	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7495708	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7497342	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8023479	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8023865	0.81[ASN][1000 genomes]
rs8026923	0.83[ASN][1000 genomes]
rs8028430	0.81[ASN][1000 genomes]
rs8029215	0.81[ASN][1000 genomes]
rs8040745	0.81[AMR][1000 genomes]
rs8043082	0.83[ASN][1000 genomes]
rs9635320	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9672559	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9888684	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74957000-74987000	Weak transcription	HMEC	breast
2	chr15:74957000-74987400	Weak transcription	Psoas Muscle	Psoas
3	chr15:74957400-74987200	Weak transcription	A549	lung
4	chr15:74964000-74977200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74964000-74977200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:74964000-74977200	Weak transcription	Pancreas	Pancrea
7	chr15:74964000-74987200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:74964000-74987400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:74964200-74977800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:74964200-74987200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:74965600-74976600	Weak transcription	NHEK	skin
12	chr15:74965600-74977000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:74965600-74977200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:74965600-74977200	Weak transcription	HSMMtube	muscle
15	chr15:74965600-74977400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:74965600-74977400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:74965600-74987400	Weak transcription	Right Ventricle	heart
18	chr15:74965600-74987400	Weak transcription	Spleen	Spleen
19	chr15:74965600-74987600	Weak transcription	Esophagus	oesophagus
20	chr15:74965800-74971600	Weak transcription	Brain Germinal Matrix	brain
21	chr15:74965800-74977000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:74965800-74977000	Weak transcription	K562	blood
23	chr15:74965800-74977200	Weak transcription	Fetal Kidney	kidney
24	chr15:74965800-74977600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:74965800-74987000	Weak transcription	HUVEC	blood vessel
26	chr15:74965800-74987200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:74965800-74987400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr15:74966000-74977000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:74966000-74977200	Weak transcription	Thymus	Thymus
30	chr15:74966000-74982800	Weak transcription	Colonic Mucosa	Colon
31	chr15:74966400-74986400	Weak transcription	NHDF-Ad	bronchial
32	chr15:74966600-74987200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr15:74966800-74977000	Weak transcription	Fetal Brain Female	brain
34	chr15:74967000-74972800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:74967000-74986600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:74967000-74987000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:74967200-74973400	Weak transcription	Brain Angular Gyrus	brain
38	chr15:74967200-74977000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:74967200-74987600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:74967400-74972000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:74967400-74975000	Weak transcription	Fetal Intestine Small	intestine
42	chr15:74967400-74975800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:74967400-74976200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:74967400-74976400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr15:74967400-74976600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr15:74967400-74976600	Weak transcription	Liver	Liver
47	chr15:74967400-74976800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:74967400-74976800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:74967400-74976800	Weak transcription	Left Ventricle	heart
50	chr15:74967400-74977000	Weak transcription	Primary B cells from cord blood	blood

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