Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75019811-75019931	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75014713..75016571-chr15:75018498..75020290,2	MCF-7	breast:
2	chr15:75018522..75021766-chr15:75024358..75026673,3	MCF-7	breast:
3	chr15:75008995..75011604-chr15:75018955..75020856,2	K562	blood:

Variant related genes	Relation type
CYP1A1	TF binding region

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11072500	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12441932	0.81[ASN][1000 genomes]
rs1456432	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2198843	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2415245	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3826041	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886605	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6495118	0.81[ASN][1000 genomes]
rs6495121	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74025818	0.81[ASN][1000 genomes]
rs9672559	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75018600-75021000	Enhancers	Fetal Heart	heart
2	chr15:75019200-75020400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:75019200-75020400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr15:75019200-75020400	Enhancers	Left Ventricle	heart
5	chr15:75019200-75020400	Enhancers	A549	lung
6	chr15:75019200-75020600	Enhancers	Right Ventricle	heart
7	chr15:75019400-75020000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:75019400-75020000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
9	chr15:75019400-75020400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr15:75019400-75020400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:75019400-75020400	Enhancers	Lung	lung
12	chr15:75019400-75020600	Enhancers	Liver	Liver
13	chr15:75019400-75020600	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr15:75019400-75020600	Enhancers	Hela-S3	cervix
15	chr15:75019400-75020600	Enhancers	HepG2	liver
16	chr15:75019400-75033800	Weak transcription	Right Atrium	heart
17	chr15:75019600-75020000	Weak transcription	Psoas Muscle	Psoas
18	chr15:75019600-75020600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
19	chr15:75019600-75022200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:75019800-75020000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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