Variant report

Variant	rs4658016
Chromosome Location	chr1:196084924-196084925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196080775..196083436-chr1:196084849..196086558,2	K562	blood:
2	chr1:196084793..196086463-chr1:196093018..196095488,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10922026	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10922027	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10922028	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12036795	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12038453	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12129673	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12563475	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12566117	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4131138	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4428867	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4625262	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4658017	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7417237	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757765	chr1:195803764-196119454	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758989	chr1:195803764-196119454	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv872948	chr1:195872295-196236425	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv470769	chr1:195901676-196187665	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv467339	chr1:195912579-196119310	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv548738	chr1:195912579-196119310	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv534209	chr1:196011881-196208885	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv872951	chr1:196027872-196166278	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv430080	chr1:196074775-196101014	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196083200-196086000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:196083600-196097800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:196084400-196085200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:196084400-196085200	Enhancers	Fetal Heart	heart
5	chr1:196084400-196085400	Enhancers	NHDF-Ad	bronchial
6	chr1:196084400-196085600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:196084600-196085200	Enhancers	Brain Angular Gyrus	brain
8	chr1:196084600-196085200	Enhancers	Brain Anterior Caudate	brain
9	chr1:196084600-196085200	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:196084600-196085200	Enhancers	Brain Hippocampus Middle	brain
11	chr1:196084600-196085200	Enhancers	K562	blood
12	chr1:196084600-196085400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:196084800-196085000	Enhancers	Psoas Muscle	Psoas
14	chr1:196084800-196085200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:196084800-196085200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:196084800-196085200	Enhancers	Brain Substantia Nigra	brain
17	chr1:196084800-196085200	Enhancers	Colon Smooth Muscle	Colon
18	chr1:196084800-196085200	Enhancers	Pancreas	Pancrea
19	chr1:196084800-196085200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr1:196084800-196085200	Enhancers	HMEC	breast
21	chr1:196084800-196085400	Enhancers	Adipose Nuclei	Adipose

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