Variant report

Variant	rs4669146
Chromosome Location	chr2:7325035-7325036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12474153	0.81[EUR][1000 genomes]
rs1464880	0.83[CHB][hapmap]
rs17672986	0.81[AFR][1000 genomes]
rs1880604	0.81[AFR][1000 genomes]
rs4668526	0.81[AFR][1000 genomes]
rs6739202	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4669146	YWHAQ	cis	cerebellum	SCAN
rs4669146	NOL10	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7321200-7328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:7321200-7328400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:7321200-7329200	Weak transcription	Pancreas	Pancrea
4	chr2:7321400-7328400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:7321400-7331600	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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