Variant report

Variant	rs6739202
Chromosome Location	chr2:7335518-7335519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7333942..7335730-chr2:8825040..8827834,2	MCF-7	breast:
2	chr2:7334770..7337311-chr2:7337607..7339692,2	K562	blood:
3	chr2:7330725..7333657-chr2:7333775..7335694,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10929471	0.82[ASN][1000 genomes]
rs10929473	0.80[ASN][1000 genomes]
rs10929474	0.83[ASN][1000 genomes]
rs11682417	0.81[ASN][1000 genomes]
rs12474153	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12612059	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12619070	0.82[ASN][1000 genomes]
rs12999068	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13007890	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13013964	0.84[ASN][1000 genomes]
rs13035063	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1404841	0.85[ASN][1000 genomes]
rs1404842	0.83[ASN][1000 genomes]
rs1404843	0.85[ASN][1000 genomes]
rs1404844	0.85[ASN][1000 genomes]
rs1404845	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1464880	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1473655	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1474401	0.85[ASN][1000 genomes]
rs1474402	0.85[ASN][1000 genomes]
rs1474403	0.85[ASN][1000 genomes]
rs1525490	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1525492	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16866007	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16866008	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16866010	0.93[ASN][1000 genomes]
rs17672986	0.85[ASN][1000 genomes]
rs1880604	0.85[ASN][1000 genomes]
rs1880605	0.84[ASN][1000 genomes]
rs1917678	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1917680	0.85[ASN][1000 genomes]
rs2352711	0.85[ASN][1000 genomes]
rs34325684	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4233854	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4265983	0.87[ASN][1000 genomes]
rs4668526	0.85[ASN][1000 genomes]
rs4668531	0.81[ASN][1000 genomes]
rs4669146	0.85[EUR][1000 genomes]
rs4669147	0.85[ASN][1000 genomes]
rs4669148	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4669149	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4669150	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4669153	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4669154	0.81[ASN][1000 genomes]
rs4669155	0.81[ASN][1000 genomes]
rs4669156	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4669158	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4669164	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4669169	0.83[ASN][1000 genomes]
rs55869666	0.86[ASN][1000 genomes]
rs6719090	0.85[ASN][1000 genomes]
rs6744969	0.85[ASN][1000 genomes]
rs6745122	0.85[ASN][1000 genomes]
rs7557233	0.85[ASN][1000 genomes]
rs7559257	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7607300	0.85[ASN][1000 genomes]
rs872442	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7331000-7341800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:7335400-7335600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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