Variant report

Variant	rs4670187
Chromosome Location	chr2:37429349-37429350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37422648..37425855-chr2:37426588..37429472,6	MCF-7	breast:
2	chr2:37426617..37429540-chr2:37457354..37459837,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000115816	Chromatin interaction
ENSG00000218739	Chromatin interaction

rs_ID	r²[population]
rs1017160	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12469082	1.00[YRI][hapmap]
rs13412560	1.00[YRI][hapmap]
rs17020358	1.00[YRI][hapmap]
rs2075215	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs2075216	0.80[AMR][1000 genomes]
rs2239650	0.97[ASN][1000 genomes]
rs2255991	1.00[CEU][hapmap]
rs2268988	1.00[YRI][hapmap]
rs2300891	1.00[YRI][hapmap]
rs3213746	1.00[YRI][hapmap]
rs3770749	1.00[CEU][hapmap]
rs3815555	1.00[CEU][hapmap]
rs59612622	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs881415	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37424400-37430800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37424400-37433200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:37424400-37446400	Weak transcription	Small Intestine	intestine
4	chr2:37424600-37430400	Weak transcription	Fetal Heart	heart
5	chr2:37424600-37430600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:37424600-37430800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:37424600-37430800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:37424600-37430800	Weak transcription	Brain Angular Gyrus	brain
9	chr2:37424600-37430800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:37424600-37430800	Weak transcription	Gastric	stomach
11	chr2:37424800-37430600	Weak transcription	Brain Substantia Nigra	brain
12	chr2:37424800-37430800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr2:37424800-37430800	Weak transcription	Thymus	Thymus
14	chr2:37424800-37430800	Weak transcription	HSMMtube	muscle
15	chr2:37424800-37433200	Weak transcription	Right Atrium	heart
16	chr2:37425000-37433200	Weak transcription	Esophagus	oesophagus
17	chr2:37425000-37433200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:37425000-37444200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:37425200-37430600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:37425200-37430800	Weak transcription	Right Ventricle	heart
21	chr2:37425200-37433000	Weak transcription	Colonic Mucosa	Colon
22	chr2:37425200-37433000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr2:37425200-37433200	Weak transcription	Pancreas	Pancrea
24	chr2:37425200-37433200	Weak transcription	Stomach Mucosa	stomach
25	chr2:37425200-37433200	Weak transcription	Spleen	Spleen
26	chr2:37425800-37429400	Genic enhancers	Dnd41	blood
27	chr2:37425800-37430600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:37426000-37429800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:37426000-37430400	Weak transcription	K562	blood
30	chr2:37426200-37430800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:37426200-37438200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:37426400-37429400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
33	chr2:37426600-37430400	Strong transcription	A549	lung
34	chr2:37426600-37433600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr2:37426600-37438200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:37426600-37451400	Strong transcription	Fetal Thymus	thymus
37	chr2:37426800-37430600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr2:37426800-37430600	Strong transcription	Fetal Lung	lung
39	chr2:37426800-37433200	Strong transcription	Primary B cells from cord blood	blood
40	chr2:37427000-37429400	Strong transcription	HepG2	liver
41	chr2:37427000-37429400	Strong transcription	Osteobl	bone
42	chr2:37427000-37430000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr2:37427000-37430800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr2:37427000-37433200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr2:37427000-37433400	Strong transcription	Placenta	Placenta
46	chr2:37427000-37434200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr2:37427200-37429600	Strong transcription	Colon Smooth Muscle	Colon
48	chr2:37427200-37430200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr2:37427200-37430200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr2:37427200-37430200	Strong transcription	Fetal Muscle Trunk	muscle

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