Variant report

Variant	rs3815555
Chromosome Location	chr2:37587040-37587041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37586244..37588961-chr2:37590934..37592508,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10189564	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12468307	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12469082	0.89[MEX][hapmap]
rs12472984	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13429526	0.83[JPT][hapmap]
rs17020358	0.83[JPT][hapmap]
rs2041838	0.83[JPT][hapmap]
rs2255991	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2302651	0.80[JPT][hapmap]
rs28384455	0.80[ASN][1000 genomes]
rs3213746	0.89[MEX][hapmap]
rs3755192	0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap]
rs3770749	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4384764	0.81[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4670187	1.00[CEU][hapmap]
rs4670196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4670685	0.81[CHD][hapmap]
rs6733943	1.00[YRI][hapmap]
rs7593932	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs952711	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs952712	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37577000-37590600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
4	chr2:37577600-37588600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:37577800-37589000	Weak transcription	Left Ventricle	heart
6	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:37578600-37601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:37578800-37602200	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:37579800-37592600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr2:37579800-37603000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr2:37580200-37603400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:37581600-37595600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:37581800-37588400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:37583800-37588600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:37585000-37587800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:37585600-37588600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:37586000-37587600	Weak transcription	NHDF-Ad	bronchial

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