Variant report

Variant	rs6733943
Chromosome Location	chr2:37471465-37471466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr2:37471268-37471494	GM12878	blood:	n/a	n/a
2	BATF	chr2:37471155-37471471	GM12878	blood:	n/a	n/a
3	CREB1	chr2:37471134-37471612	GM12878	blood:	n/a	n/a
4	ATF2	chr2:37471072-37471604	GM12878	blood:	n/a	n/a
5	TBL1XR1	chr2:37471156-37471516	GM12878	blood:	n/a	n/a
6	RUNX3	chr2:37471051-37471605	GM12878	blood:	n/a	n/a
7	RUNX3	chr2:37471140-37471466	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:37466438..37469109-chr2:37469695..37472739,3	K562	blood:
2	chr2:37464823..37466486-chr2:37471416..37473912,2	K562	blood:
3	chr2:37456368..37460350-chr2:37466636..37472512,8	MCF-7	breast:
4	chr2:37457149..37460328-chr2:37469330..37472927,4	MCF-7	breast:

Variant related genes	Relation type
NDUFAF7	TF binding region
ENSG00000115816	Chromatin interaction
ENSG00000003509	Chromatin interaction

rs_ID	r²[population]
rs3770749	0.88[YRI][hapmap]
rs3815555	1.00[YRI][hapmap]
rs6743463	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6761897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37474000	Weak transcription	Colonic Mucosa	Colon
2	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
3	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
5	chr2:37460400-37472200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:37460400-37472400	Weak transcription	Brain Substantia Nigra	brain
7	chr2:37460400-37476600	Weak transcription	Right Ventricle	heart
8	chr2:37460400-37481600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:37460400-37492200	Weak transcription	Fetal Heart	heart
10	chr2:37460400-37498600	Weak transcription	Gastric	stomach
11	chr2:37460600-37488000	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:37460600-37493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:37460600-37498600	Weak transcription	Spleen	Spleen
14	chr2:37461000-37488200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:37461000-37489800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:37461800-37486800	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr2:37462000-37473400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr2:37462000-37487200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr2:37462000-37488000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:37462200-37473200	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:37462400-37472800	Weak transcription	NHEK	skin
23	chr2:37462400-37474000	Weak transcription	Aorta	Aorta
24	chr2:37462400-37479200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:37462600-37473800	Weak transcription	Ovary	ovary
26	chr2:37463200-37477000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:37463200-37481000	Strong transcription	A549	lung
28	chr2:37463200-37487200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:37463200-37487600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr2:37463200-37488000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr2:37463400-37488400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:37463400-37509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:37463600-37489600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr2:37463800-37484800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr2:37463800-37488200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:37464000-37488400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr2:37464400-37475800	Strong transcription	Hela-S3	cervix
38	chr2:37464400-37487000	Strong transcription	HSMM	muscle
39	chr2:37464400-37489600	Strong transcription	Liver	Liver
40	chr2:37464600-37476800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:37464800-37486600	Strong transcription	Fetal Intestine Large	intestine
42	chr2:37465000-37489600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr2:37465200-37476200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:37466000-37487600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr2:37466800-37476800	Weak transcription	Colon Smooth Muscle	Colon
46	chr2:37467200-37487000	Strong transcription	HepG2	liver
47	chr2:37467400-37473200	Weak transcription	Lung	lung
48	chr2:37467600-37475800	Weak transcription	Esophagus	oesophagus
49	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
50	chr2:37468200-37471800	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links