Variant report

Variant	rs4673304
Chromosome Location	chr2:205434906-205434907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10175139	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12986544	0.86[ASN][1000 genomes]
rs1447497	1.00[JPT][hapmap]
rs2111447	0.81[AMR][1000 genomes]
rs6731575	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205411600-205438000	Weak transcription	Left Ventricle	heart
2	chr2:205425800-205454400	Weak transcription	HSMM	muscle
3	chr2:205429200-205437800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:205430000-205438400	Weak transcription	Aorta	Aorta
5	chr2:205431000-205436000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:205431200-205438400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:205431600-205440600	Weak transcription	Adipose Nuclei	Adipose
8	chr2:205434400-205436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:205434400-205436200	Enhancers	Rectal Smooth Muscle	rectum
10	chr2:205434600-205435000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr2:205434600-205436200	Enhancers	Ovary	ovary
12	chr2:205434600-205436400	Enhancers	Colon Smooth Muscle	Colon
13	chr2:205434800-205435400	Enhancers	Psoas Muscle	Psoas
14	chr2:205434800-205436200	Enhancers	Fetal Intestine Large	intestine
15	chr2:205434800-205437200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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