Variant report

Variant	rs6731575
Chromosome Location	chr2:205449892-205449893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10084275	0.83[AMR][1000 genomes]
rs10932073	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10932077	0.83[AMR][1000 genomes]
rs11675511	0.83[EUR][1000 genomes]
rs11680708	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12474673	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12614238	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12986544	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13024650	0.87[EUR][1000 genomes]
rs1447497	0.95[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1868068	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2193450	0.83[AMR][1000 genomes]
rs2197691	0.95[CEU][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4673304	0.89[ASN][1000 genomes]
rs6713748	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6721452	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6731575	FZD5	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205425800-205454400	Weak transcription	HSMM	muscle
2	chr2:205438800-205458000	Weak transcription	Gastric	stomach
3	chr2:205439600-205450600	Weak transcription	Aorta	Aorta
4	chr2:205441000-205454600	Weak transcription	Psoas Muscle	Psoas
5	chr2:205446800-205456200	Weak transcription	Brain Anterior Caudate	brain
6	chr2:205447200-205450000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:205447200-205454200	Weak transcription	Ovary	ovary
8	chr2:205448800-205450000	Weak transcription	Left Ventricle	heart
9	chr2:205448800-205450800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:205449800-205450000	Enhancers	Pancreas	Pancrea
11	chr2:205449800-205450000	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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