Variant report

Variant	rs13024650
Chromosome Location	chr2:205482501-205482502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10084275	0.85[EUR][1000 genomes]
rs10170405	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10174747	0.86[EUR][1000 genomes]
rs10175139	0.84[EUR][1000 genomes]
rs10198136	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10490268	0.88[EUR][1000 genomes]
rs10804143	0.94[AFR][1000 genomes]
rs10932077	0.85[EUR][1000 genomes]
rs10932079	0.86[EUR][1000 genomes]
rs10932080	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11674084	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11675511	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11675555	0.86[EUR][1000 genomes]
rs12474673	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12474806	0.86[EUR][1000 genomes]
rs12614238	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12621708	0.85[AFR][1000 genomes]
rs12621786	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12694004	0.87[EUR][1000 genomes]
rs12986544	0.87[EUR][1000 genomes]
rs13017644	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447497	0.82[EUR][1000 genomes]
rs1861766	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1868068	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2111447	0.87[EUR][1000 genomes]
rs2193449	0.86[EUR][1000 genomes]
rs2193450	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2197691	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2216318	0.86[EUR][1000 genomes]
rs2216319	0.85[EUR][1000 genomes]
rs2334802	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4673307	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6713748	0.84[EUR][1000 genomes]
rs6721452	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6731575	0.87[EUR][1000 genomes]
rs7568847	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7587284	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7590330	0.88[EUR][1000 genomes]
rs7595939	0.89[EUR][1000 genomes]
rs7600675	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7603507	0.86[EUR][1000 genomes]
rs7609521	0.89[EUR][1000 genomes]
rs763832	0.89[EUR][1000 genomes]
rs9283519	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205476000-205486600	Weak transcription	Gastric	stomach
2	chr2:205477000-205491800	Weak transcription	Fetal Lung	lung
3	chr2:205478800-205485400	Weak transcription	Fetal Intestine Small	intestine
4	chr2:205481200-205485200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:205481200-205493600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:205481400-205501000	Weak transcription	Aorta	Aorta
7	chr2:205481600-205482600	Weak transcription	Ovary	ovary
8	chr2:205481600-205484600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr2:205481600-205494200	Weak transcription	Fetal Brain Male	brain
10	chr2:205482200-205493800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:205482400-205482600	Enhancers	Pancreas	Pancrea
12	chr2:205482400-205483600	Weak transcription	Colon Smooth Muscle	Colon

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