Variant report

Variant	rs10175139
Chromosome Location	chr2:205465756-205465757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10084275	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10170405	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10174747	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10198136	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10490268	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10804142	0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10932077	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10932079	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10932080	0.93[EUR][1000 genomes]
rs11674084	0.95[EUR][1000 genomes]
rs11675511	0.83[EUR][1000 genomes]
rs11675555	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11680708	0.87[EUR][1000 genomes]
rs12474673	0.83[EUR][1000 genomes]
rs12474806	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12614238	0.83[EUR][1000 genomes]
rs12621786	0.92[EUR][1000 genomes]
rs12694004	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13017644	0.94[EUR][1000 genomes]
rs13024650	0.84[EUR][1000 genomes]
rs1447497	0.90[CEU][hapmap]
rs1861766	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1868068	0.86[EUR][1000 genomes]
rs2111447	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2193449	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2193450	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2197691	0.90[CEU][hapmap]
rs2216318	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2216319	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2334802	0.94[EUR][1000 genomes]
rs4673304	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4673307	0.94[EUR][1000 genomes]
rs6713748	0.84[AMR][1000 genomes]
rs6721452	0.85[EUR][1000 genomes]
rs7568847	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7587284	0.94[EUR][1000 genomes]
rs7590330	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7595939	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7600675	0.94[EUR][1000 genomes]
rs7603507	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7609521	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs763832	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9283519	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10175139	FZD5	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205461400-205468800	Weak transcription	Aorta	Aorta
2	chr2:205461800-205466800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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