Variant report

Variant	rs763832
Chromosome Location	chr2:205494935-205494936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10084275	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10170405	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10174747	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175139	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10198136	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10490268	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10932077	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10932079	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10932080	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11674084	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11675511	0.85[EUR][1000 genomes]
rs11675555	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11680708	0.82[EUR][1000 genomes]
rs12474673	0.88[EUR][1000 genomes]
rs12474806	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12614238	0.88[EUR][1000 genomes]
rs12621786	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12694004	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13017644	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13024650	0.89[EUR][1000 genomes]
rs1447497	1.00[JPT][hapmap]
rs1861766	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1868068	0.84[EUR][1000 genomes]
rs2111447	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2193449	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2193450	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2216318	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2216319	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2334802	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4673307	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6713748	0.81[AMR][1000 genomes]
rs6721452	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7568847	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7587284	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7590330	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7595939	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7600675	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7603507	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7609521	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9283519	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205481400-205501000	Weak transcription	Aorta	Aorta
2	chr2:205486000-205499200	Weak transcription	Fetal Intestine Small	intestine
3	chr2:205490200-205497400	Weak transcription	Ovary	ovary
4	chr2:205490200-205505000	Weak transcription	Left Ventricle	heart
5	chr2:205493800-205495000	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:205494200-205508800	Weak transcription	HSMM	muscle
7	chr2:205494200-205509800	Weak transcription	HSMMtube	muscle
8	chr2:205494400-205496000	Weak transcription	Fetal Brain Male	brain

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