Variant report

Variant	rs4680225
Chromosome Location	chr3:155703930-155703931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12488133	0.92[ASN][1000 genomes]
rs1711083	0.83[EUR][1000 genomes]
rs1711085	0.82[EUR][1000 genomes]
rs386067	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4679756	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4680226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286802	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6441025	1.00[CHB][hapmap]
rs6441026	0.90[GIH][hapmap];0.88[TSI][hapmap]
rs6441027	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7643525	0.86[GIH][hapmap];0.88[TSI][hapmap]
rs819847	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs819855	0.83[EUR][1000 genomes]
rs819862	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs819863	0.83[EUR][1000 genomes]
rs9846717	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155701800-155704000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:155703600-155704000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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