Variant report

Variant	rs6441026
Chromosome Location	chr3:155611557-155611558
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155610858..155613058-chr3:155634768..155637699,2	K562	blood:
2	chr3:155588237..155589933-chr3:155609584..155611923,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1025341	0.88[JPT][hapmap]
rs1027535	0.88[JPT][hapmap]
rs1035990	0.88[JPT][hapmap]
rs10513483	0.88[JPT][hapmap]
rs12491537	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493448	0.88[JPT][hapmap]
rs13060931	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13315001	0.88[JPT][hapmap]
rs1685728	0.81[EUR][1000 genomes]
rs1685729	0.81[EUR][1000 genomes]
rs1711083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711085	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1878213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3087838	0.88[JPT][hapmap]
rs364463	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762716	0.88[JPT][hapmap]
rs386067	0.87[EUR][1000 genomes]
rs408583	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs410042	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679756	0.87[EUR][1000 genomes]
rs4680221	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680225	0.90[GIH][hapmap];0.88[TSI][hapmap]
rs62286782	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286789	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286802	0.87[EUR][1000 genomes]
rs62286805	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441027	0.87[EUR][1000 genomes]
rs6768724	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6797143	0.88[JPT][hapmap]
rs6800944	0.88[JPT][hapmap]
rs6805683	0.88[JPT][hapmap]
rs7625201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7636930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643525	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819845	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs819846	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs819847	0.85[EUR][1000 genomes]
rs819855	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs819863	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs819866	0.83[EUR][1000 genomes]
rs819867	0.81[EUR][1000 genomes]
rs819868	0.91[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs9840456	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846717	0.88[EUR][1000 genomes]
rs9851800	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155591000-155611800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:155591200-155612600	Weak transcription	Primary B cells from cord blood	blood
5	chr3:155591400-155616200	Weak transcription	NHEK	skin
6	chr3:155592000-155611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:155594200-155622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:155598600-155630000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:155599400-155616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:155599800-155633400	Weak transcription	Right Ventricle	heart
11	chr3:155600000-155612000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:155600400-155615400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:155600400-155617200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:155603800-155657800	Weak transcription	Esophagus	oesophagus
15	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:155605000-155632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:155606800-155612000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:155607000-155633400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:155607200-155611600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:155607200-155612600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:155607200-155656800	Weak transcription	Small Intestine	intestine
22	chr3:155607400-155611800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:155607400-155611800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:155607400-155611800	Weak transcription	Left Ventricle	heart
25	chr3:155607400-155612200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:155607400-155615400	Weak transcription	Brain Anterior Caudate	brain
27	chr3:155607400-155625800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr3:155607400-155630600	Weak transcription	Lung	lung
29	chr3:155607400-155632600	Weak transcription	Gastric	stomach
30	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
31	chr3:155607800-155625600	Weak transcription	Brain Germinal Matrix	brain
32	chr3:155608000-155611800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:155608000-155612000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:155608200-155615000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:155608400-155612000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:155608600-155611800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:155608600-155611800	Weak transcription	Fetal Intestine Small	intestine
38	chr3:155608600-155611800	Weak transcription	HMEC	breast
39	chr3:155608600-155615600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:155608600-155616600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:155608600-155646400	Strong transcription	Dnd41	blood
42	chr3:155608800-155611800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:155608800-155611800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr3:155608800-155612200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr3:155608800-155612800	Weak transcription	Adipose Nuclei	Adipose
46	chr3:155608800-155614800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:155608800-155614800	Weak transcription	HSMMtube	muscle
48	chr3:155608800-155615000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:155608800-155615000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:155608800-155615200	Weak transcription	Colon Smooth Muscle	Colon

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