Variant report

Variant	rs819868
Chromosome Location	chr3:155724124-155724125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155723529..155726254-chr3:155754834..155758611,3	K562	blood:
2	chr3:155723376..155725127-chr3:155726648..155728889,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169282	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13060931	0.81[ASN][1000 genomes]
rs1516500	0.85[CEU][hapmap]
rs1685728	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1685729	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711083	0.91[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1711085	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878213	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4680221	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62286805	0.81[EUR][1000 genomes]
rs6441026	0.91[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs6768724	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7625201	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7636930	0.81[EUR][1000 genomes]
rs7643525	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs819845	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs819846	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs819855	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs819862	0.83[EUR][1000 genomes]
rs819863	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs819866	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs819867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819872	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840456	0.81[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9846717	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155723000-155724200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:155723000-155724200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:155723000-155724200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:155723000-155724200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:155723000-155724800	Enhancers	Fetal Intestine Large	intestine
6	chr3:155723000-155724800	Enhancers	Fetal Intestine Small	intestine
7	chr3:155723600-155724200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:155723800-155724200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:155723800-155724200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr3:155724000-155725200	Enhancers	HepG2	liver

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