Variant report

Variant	rs819867
Chromosome Location	chr3:155723064-155723065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13060931	0.81[ASN][1000 genomes]
rs1516500	0.85[CEU][hapmap]
rs1685728	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1685729	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711083	0.91[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1711085	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878213	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4680221	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4680225	0.88[TSI][hapmap]
rs62286805	0.81[EUR][1000 genomes]
rs6441026	0.91[CEU][hapmap];0.82[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs6768724	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7625201	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7636930	0.81[EUR][1000 genomes]
rs7643525	0.83[CEU][hapmap];0.82[CHB][hapmap];0.96[CHD][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs819845	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs819846	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs819855	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs819862	0.83[EUR][1000 genomes]
rs819863	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs819866	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs819868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819872	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840456	0.81[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9846717	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155722800-155723400	Enhancers	HepG2	liver
2	chr3:155723000-155723200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155723000-155723400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:155723000-155723800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:155723000-155724000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:155723000-155724000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155723000-155724200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:155723000-155724200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:155723000-155724200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:155723000-155724200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:155723000-155724800	Enhancers	Fetal Intestine Large	intestine
12	chr3:155723000-155724800	Enhancers	Fetal Intestine Small	intestine

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