Variant report

Variant	rs4680221
Chromosome Location	chr3:155642593-155642594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12491537	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13060931	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1685728	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1685729	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1711083	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1711085	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1878213	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs364463	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs386067	0.87[EUR][1000 genomes]
rs408583	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs410042	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679756	0.87[EUR][1000 genomes]
rs62286782	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62286789	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286802	0.87[EUR][1000 genomes]
rs62286805	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441026	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441027	0.87[EUR][1000 genomes]
rs6768724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7625201	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636930	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643525	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs819845	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs819846	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs819847	0.85[EUR][1000 genomes]
rs819855	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs819863	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs819866	0.83[EUR][1000 genomes]
rs819867	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs819868	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs819872	0.81[ASN][1000 genomes]
rs9840456	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846717	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155603800-155657800	Weak transcription	Esophagus	oesophagus
4	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:155607200-155656800	Weak transcription	Small Intestine	intestine
6	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
7	chr3:155608600-155646400	Strong transcription	Dnd41	blood
8	chr3:155608800-155654800	Weak transcription	Aorta	Aorta
9	chr3:155609200-155657200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:155609600-155652000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:155610800-155646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:155610800-155646200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:155611000-155646200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:155611000-155646200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:155611200-155646200	Strong transcription	Fetal Thymus	thymus
16	chr3:155612400-155648600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:155612800-155646000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:155623000-155646200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:155624400-155646200	Strong transcription	Fetal Muscle Trunk	muscle
20	chr3:155626200-155646200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:155626400-155645800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:155626800-155646200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr3:155627000-155646200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr3:155627400-155644200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:155628200-155643200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:155628800-155643000	Weak transcription	NHLF	lung
27	chr3:155631000-155651600	Weak transcription	Fetal Heart	heart
28	chr3:155631600-155644200	Strong transcription	Osteobl	bone
29	chr3:155632000-155644200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr3:155632200-155643600	Strong transcription	Hela-S3	cervix
31	chr3:155632200-155645600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:155632200-155646200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:155632600-155644200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr3:155633800-155668200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:155634200-155654600	Weak transcription	Spleen	Spleen
36	chr3:155634400-155643200	Weak transcription	Right Ventricle	heart
37	chr3:155634400-155646400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:155634400-155654200	Weak transcription	Colonic Mucosa	Colon
39	chr3:155634600-155643800	Weak transcription	Brain Angular Gyrus	brain
40	chr3:155634600-155656200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:155634600-155660600	Weak transcription	Stomach Mucosa	stomach
42	chr3:155634800-155642800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr3:155634800-155642800	Weak transcription	Brain Substantia Nigra	brain
44	chr3:155635000-155643200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:155635000-155653200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:155635200-155643000	Weak transcription	Thymus	Thymus
47	chr3:155635400-155643200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr3:155635400-155653200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:155635600-155643400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:155635600-155643400	Weak transcription	Brain Germinal Matrix	brain

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