Variant report

Variant	rs410042
Chromosome Location	chr3:155589421-155589422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155520264..155525290-chr3:155586627..155590296,8	K562	blood:
2	chr3:155461486..155465793-chr3:155586998..155592801,6	K562	blood:
3	chr3:155588737..155589548-chr6:79787120..79787910,2	Hela-S3	cervix:
4	chr3:155461523..155464397-chr3:155587900..155591398,5	MCF-7	breast:
5	chr3:155568718..155574348-chr3:155586235..155593210,15	K562	blood:
6	chr3:155461195..155464539-chr3:155588373..155590107,3	MCF-7	breast:
7	chr3:155520823..155524412-chr3:155585049..155590112,5	MCF-7	breast:
8	chr3:155546434..155549740-chr3:155588922..155591609,3	K562	blood:
9	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:
10	chr3:155570444..155573449-chr3:155586982..155591161,10	MCF-7	breast:
11	chr3:155508129..155511910-chr3:155589025..155592150,5	K562	blood:
12	chr3:155588991..155589767-chr8:42561392..42562198,2	MCF-7	breast:
13	chr3:155522507..155525053-chr3:155587874..155590161,2	MCF-7	breast:
14	chr12:57481089..57481593-chr3:155588853..155589555,2	Hela-S3	cervix:
15	chr20:52490662..52493657-chr3:155587949..155590436,2	MCF-7	breast:
16	chr3:155588914..155589438-chr5:122758485..122759116,2	Hela-S3	cervix:
17	chr3:155461486..155463918-chr3:155586998..155589713,4	K562	blood:
18	chr17:41444827..41445515-chr3:155589052..155589685,2	Hela-S3	cervix:
19	chr12:52446751..52447647-chr3:155588925..155589570,2	Hela-S3	cervix:
20	chr17:47269616..47270188-chr3:155588780..155589530,2	Hela-S3	cervix:
21	chr3:155569630..155574596-chr3:155585012..155589734,13	MCF-7	breast:
22	chr3:155542984..155546032-chr3:155588634..155590406,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction
ENSG00000174928	Chromatin interaction
ENSG00000241721	Chromatin interaction
ENSG00000214919	Chromatin interaction
ENSG00000123358	Chromatin interaction
ENSG00000168944	Chromatin interaction
ENSG00000114805	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12491537	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060931	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1711083	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711085	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1878213	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs364463	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs408583	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680221	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286782	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286789	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286805	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441026	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768724	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7625201	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7636930	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643525	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819845	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs819846	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs819855	0.82[EUR][1000 genomes]
rs819863	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9840456	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3325134	chr3:155587683-155590231	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155587400-155590000	Active TSS	Aorta	Aorta
2	chr3:155587400-155590600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:155587400-155590600	Active TSS	HepG2	liver
4	chr3:155587400-155591000	Active TSS	H1 Cell Line	embryonic stem cell
5	chr3:155587600-155590000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:155587600-155590000	Active TSS	Placenta Amnion	Placenta Amnion
7	chr3:155587600-155590000	Active TSS	HSMM	muscle
8	chr3:155587600-155590200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr3:155587600-155590200	Active TSS	Left Ventricle	heart
10	chr3:155587600-155590200	Active TSS	Right Atrium	heart
11	chr3:155587600-155590200	Active TSS	Right Ventricle	heart
12	chr3:155587600-155590200	Active TSS	A549	lung
13	chr3:155587600-155590400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr3:155587600-155590400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:155587600-155590400	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr3:155587600-155590400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:155587600-155590800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:155587600-155591000	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr3:155587800-155589800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:155587800-155589800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:155587800-155589800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:155587800-155589800	Active TSS	Esophagus	oesophagus
23	chr3:155587800-155589800	Active TSS	Lung	lung
24	chr3:155587800-155590000	Active TSS	Colon Smooth Muscle	Colon
25	chr3:155587800-155590000	Active TSS	Fetal Kidney	kidney
26	chr3:155587800-155590000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr3:155587800-155590000	Active TSS	Gastric	stomach
28	chr3:155587800-155590000	Active TSS	Psoas Muscle	Psoas
29	chr3:155587800-155590000	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr3:155587800-155590000	Active TSS	Small Intestine	intestine
31	chr3:155587800-155590200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr3:155587800-155590200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr3:155587800-155590200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:155587800-155590200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:155587800-155590200	Active TSS	Ovary	ovary
36	chr3:155587800-155590600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:155588000-155589600	Active TSS	Primary monocytes fromperipheralblood	blood
38	chr3:155588000-155589600	Active TSS	Primary B cells from peripheral blood	blood
39	chr3:155588000-155589600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr3:155588000-155589600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr3:155588000-155589600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr3:155588000-155589600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:155588000-155589600	Active TSS	Adipose Nuclei	Adipose
44	chr3:155588000-155589600	Weak transcription	Fetal Heart	heart
45	chr3:155588000-155589600	Active TSS	Fetal Muscle Leg	muscle
46	chr3:155588000-155589600	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr3:155588000-155589600	Active TSS	Spleen	Spleen
48	chr3:155588000-155589600	Active TSS	HUVEC	blood vessel
49	chr3:155588000-155589600	Active TSS	Monocytes-CD14+_RO01746	blood
50	chr3:155588000-155589800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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