Variant report

Variant	rs7636930
Chromosome Location	chr3:155606862-155606863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155581025..155583122-chr3:155605137..155607755,2	K562	blood:
2	chr3:155587263..155590134-chr3:155606733..155610568,6	K562	blood:
3	chr3:155601296..155605428-chr3:155605959..155609229,4	MCF-7	breast:
4	chr3:155601913..155604220-chr3:155605783..155608605,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12491537	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060931	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1685728	0.81[EUR][1000 genomes]
rs1685729	0.81[EUR][1000 genomes]
rs1711083	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711085	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1878213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs364463	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs386067	0.87[EUR][1000 genomes]
rs408583	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs410042	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679756	0.87[EUR][1000 genomes]
rs4680221	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286782	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286789	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286802	0.87[EUR][1000 genomes]
rs62286805	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441027	0.87[EUR][1000 genomes]
rs6768724	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7625201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643525	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819845	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs819846	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs819847	0.85[EUR][1000 genomes]
rs819855	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs819863	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs819866	0.83[EUR][1000 genomes]
rs819867	0.81[EUR][1000 genomes]
rs819868	0.81[EUR][1000 genomes]
rs9840456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846717	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155589800-155607000	Weak transcription	Pancreas	Pancrea
2	chr3:155590200-155608400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:155590800-155607200	Weak transcription	Brain Angular Gyrus	brain
6	chr3:155591000-155607200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:155591000-155611200	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:155591000-155611800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:155591200-155607800	Weak transcription	Fetal Intestine Small	intestine
10	chr3:155591200-155612600	Weak transcription	Primary B cells from cord blood	blood
11	chr3:155591400-155611200	Weak transcription	Fetal Thymus	thymus
12	chr3:155591400-155616200	Weak transcription	NHEK	skin
13	chr3:155592000-155611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:155592200-155607000	Weak transcription	NHDF-Ad	bronchial
15	chr3:155592200-155607200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:155592600-155608400	Weak transcription	Hela-S3	cervix
17	chr3:155593200-155607000	Weak transcription	Aorta	Aorta
18	chr3:155593200-155607000	Weak transcription	Psoas Muscle	Psoas
19	chr3:155593400-155607000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:155593400-155607000	Weak transcription	Gastric	stomach
21	chr3:155594200-155622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:155594400-155607200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:155594400-155607800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:155596800-155611200	Weak transcription	Thymus	Thymus
25	chr3:155597400-155607000	Weak transcription	Lung	lung
26	chr3:155598400-155607200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:155598400-155607800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:155598600-155630000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr3:155598800-155608600	Weak transcription	Dnd41	blood
30	chr3:155599400-155616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:155599800-155611400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:155599800-155633400	Weak transcription	Right Ventricle	heart
33	chr3:155600000-155607000	Weak transcription	Ovary	ovary
34	chr3:155600000-155608400	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:155600000-155611200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr3:155600000-155612000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:155600200-155607200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:155600200-155607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:155600400-155607000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:155600400-155607200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:155600400-155615400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr3:155600400-155617200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:155602600-155607200	Weak transcription	Fetal Lung	lung
44	chr3:155602600-155607800	Weak transcription	HSMM	muscle
45	chr3:155603000-155608400	Weak transcription	Stomach Mucosa	stomach
46	chr3:155603200-155608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr3:155603200-155611000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:155603800-155657800	Weak transcription	Esophagus	oesophagus
49	chr3:155604000-155607000	Weak transcription	HepG2	liver
50	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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