Variant report

Variant	rs1711085
Chromosome Location	chr3:155699138-155699139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12491537	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13060931	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1685728	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1685729	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1711083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878213	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs364463	0.81[EUR][1000 genomes]
rs408583	0.81[EUR][1000 genomes]
rs410042	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4680221	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4680225	0.82[EUR][1000 genomes]
rs4680226	0.82[EUR][1000 genomes]
rs62286782	0.81[EUR][1000 genomes]
rs62286789	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62286805	0.90[EUR][1000 genomes]
rs6441026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6768724	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7625201	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7636930	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7643525	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs819845	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs819846	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs819855	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs819863	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819866	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs819867	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs819868	0.91[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs819872	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9840456	0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9846717	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155698400-155699400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:155698400-155699400	Weak transcription	Osteobl	bone
3	chr3:155698400-155699600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:155698400-155699600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:155698400-155699600	Weak transcription	NH-A	brain

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