Variant report

Variant	rs4682394
Chromosome Location	chr3:112006739-112006740
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10934151	0.80[AMR][1000 genomes]
rs10934152	0.80[AMR][1000 genomes]
rs11923778	0.93[ASN][1000 genomes]
rs11929523	0.95[ASN][1000 genomes]
rs11929540	0.95[ASN][1000 genomes]
rs12487206	0.80[AMR][1000 genomes]
rs1304787	0.80[AMR][1000 genomes]
rs13081485	0.80[AMR][1000 genomes]
rs13081935	0.80[AMR][1000 genomes]
rs4234415	0.80[AMR][1000 genomes]
rs4264699	0.80[AMR][1000 genomes]
rs4280609	0.80[AMR][1000 genomes]
rs4299459	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4300982	0.82[AMR][1000 genomes]
rs4345043	0.80[AMR][1000 genomes]
rs4420835	0.80[AMR][1000 genomes]
rs4423739	0.80[AMR][1000 genomes]
rs4429601	0.80[AMR][1000 genomes]
rs4434124	0.80[AMR][1000 genomes]
rs4435608	0.80[AMR][1000 genomes]
rs4478055	0.80[AMR][1000 genomes]
rs4479562	0.80[AMR][1000 genomes]
rs4530500	0.80[AMR][1000 genomes]
rs4560270	0.80[AMR][1000 genomes]
rs4560274	0.80[AMR][1000 genomes]
rs4568108	0.80[AMR][1000 genomes]
rs4571212	0.80[AMR][1000 genomes]
rs4572740	0.80[AMR][1000 genomes]
rs4580518	0.80[AMR][1000 genomes]
rs4591478	0.80[AMR][1000 genomes]
rs4597682	0.80[AMR][1000 genomes]
rs4611789	0.80[AMR][1000 genomes]
rs4632517	0.80[AMR][1000 genomes]
rs4682096	0.80[AMR][1000 genomes]
rs4682097	0.80[AMR][1000 genomes]
rs4682382	0.80[AMR][1000 genomes]
rs57512585	0.93[ASN][1000 genomes]
rs6438061	0.80[AMR][1000 genomes]
rs6438062	0.80[AMR][1000 genomes]
rs6768494	0.86[AMR][1000 genomes]
rs6769267	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6788397	0.80[AMR][1000 genomes]
rs6796949	0.80[AMR][1000 genomes]
rs71618779	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7613061	0.80[AMR][1000 genomes]
rs7624367	0.80[AMR][1000 genomes]
rs7625173	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7635069	0.80[AMR][1000 genomes]
rs7635156	0.80[AMR][1000 genomes]
rs7638520	0.80[AMR][1000 genomes]
rs7650498	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9288946	0.80[AMR][1000 genomes]
rs9288947	0.80[AMR][1000 genomes]
rs9809384	0.80[AMR][1000 genomes]
rs9809404	0.80[AMR][1000 genomes]
rs9813794	0.80[AMR][1000 genomes]
rs9822786	0.80[AMR][1000 genomes]
rs9823421	0.80[AMR][1000 genomes]
rs9858911	0.80[AMR][1000 genomes]
rs9860819	0.80[AMR][1000 genomes]
rs9865784	0.80[AMR][1000 genomes]
rs9873623	0.80[AMR][1000 genomes]
rs9878213	0.80[AMR][1000 genomes]
rs9878675	0.80[AMR][1000 genomes]
rs9879184	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112006600-112007200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:112006600-112012400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links