Variant report

Variant	rs7625173
Chromosome Location	chr3:112003074-112003075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111993821..111999199-chr3:111999738..112003552,5	K562	blood:

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10934141	0.84[EUR][1000 genomes]
rs10934145	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs10934151	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10934152	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10934162	0.91[CHB][hapmap]
rs10934163	0.88[CEU][hapmap]
rs11707558	0.84[CEU][hapmap];0.92[CHB][hapmap];0.84[EUR][1000 genomes]
rs11922559	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs11923778	0.92[CHB][hapmap];0.91[CHD][hapmap];0.86[ASN][1000 genomes]
rs11929523	0.88[ASN][1000 genomes]
rs11929540	0.88[ASN][1000 genomes]
rs12487206	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12488760	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs12491362	0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs12497979	0.88[CEU][hapmap]
rs12634742	0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs12634769	0.84[CEU][hapmap];0.92[CHB][hapmap];0.80[EUR][1000 genomes]
rs12637609	0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs1304787	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13080158	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13081485	0.87[CEU][hapmap];0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13081935	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13082509	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs13087086	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs13091454	0.84[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs13100724	0.92[CHB][hapmap]
rs1492491	0.84[CHB][hapmap]
rs17446744	0.92[CHB][hapmap]
rs1826392	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4234412	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs4234413	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs4234415	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4264699	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4276157	0.84[CHB][hapmap]
rs4280609	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4282033	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs4282034	0.84[CHB][hapmap];0.86[CHD][hapmap]
rs4299459	0.91[CEU][hapmap];0.90[CHB][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4300982	0.87[CEU][hapmap];0.92[CHB][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4345043	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4392388	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs4398404	0.91[CHB][hapmap];0.83[YRI][hapmap]
rs4401342	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs4420835	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4423739	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4429601	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4434124	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4435608	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4478055	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4479562	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4505669	0.84[CEU][hapmap];0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4530500	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4560270	0.83[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4560274	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4568108	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4571212	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4572740	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4580518	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4585166	0.84[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4591478	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4597682	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4611789	0.88[CEU][hapmap];0.92[CHB][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4632517	0.84[CEU][hapmap];0.92[CHB][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4682096	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4682097	0.82[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4682380	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs4682382	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4682394	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57512585	0.86[ASN][1000 genomes]
rs59967068	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62276970	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6438061	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6438062	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6768494	0.84[AMR][1000 genomes]
rs6769267	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6773916	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs6781344	0.84[CEU][hapmap];0.92[CHB][hapmap];0.84[EUR][1000 genomes]
rs6788397	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6791182	0.84[CHB][hapmap]
rs6796949	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6798551	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs71618779	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7613061	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7616261	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs7621431	0.88[CEU][hapmap]
rs7624367	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7627314	0.92[CHB][hapmap]
rs7635054	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7635069	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7635156	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7638520	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7650498	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9288946	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9288947	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9758396	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs9809384	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9809404	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9809696	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9813794	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9822786	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9823421	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9826043	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs9847574	0.81[CEU][hapmap];0.92[CHB][hapmap]
rs9858911	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9860819	0.88[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9863061	0.92[CHB][hapmap]
rs9865494	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9865784	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9869657	0.80[EUR][1000 genomes]
rs9870132	0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs9873623	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9878213	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9878675	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9879184	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112002400-112004200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:112003000-112003400	Enhancers	GM12878-XiMat	blood

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