Variant report

Variant	rs17446744
Chromosome Location	chr3:111951184-111951185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs1032398	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10511310	0.89[CEU][hapmap]
rs10934141	1.00[ASN][1000 genomes]
rs10934145	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10934151	0.98[ASN][1000 genomes]
rs10934152	0.98[ASN][1000 genomes]
rs10934162	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11707558	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11922559	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11923778	0.83[CHB][hapmap]
rs11926389	0.85[CEU][hapmap]
rs12487206	0.96[ASN][1000 genomes]
rs12488760	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12489470	0.84[CEU][hapmap]
rs12489616	0.85[CEU][hapmap]
rs12491362	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12634742	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12634769	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12636943	0.83[CEU][hapmap]
rs12637609	0.90[CHB][hapmap];1.00[ASN][1000 genomes]
rs1304787	0.98[ASN][1000 genomes]
rs13063452	0.86[CEU][hapmap]
rs13064242	0.84[CEU][hapmap]
rs13080158	0.97[ASN][1000 genomes]
rs13081485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13081935	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs13082509	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13087086	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13091454	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13100724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13101044	0.88[CHB][hapmap]
rs1388858	0.88[CEU][hapmap]
rs1388859	0.85[CEU][hapmap]
rs1492491	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16859355	0.96[ASN][1000 genomes]
rs17446282	0.88[CEU][hapmap]
rs17505536	0.87[CEU][hapmap]
rs1826392	0.96[ASN][1000 genomes]
rs2120095	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs340163	0.82[ASW][hapmap];0.84[CEU][hapmap];0.83[CHB][hapmap]
rs4234409	0.84[CEU][hapmap]
rs4234411	0.84[CEU][hapmap]
rs4234412	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4234413	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4234415	0.94[ASN][1000 genomes]
rs4264699	0.98[ASN][1000 genomes]
rs4276157	0.96[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs4280609	0.98[ASN][1000 genomes]
rs4282033	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4282034	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4299459	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4300982	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs4321508	0.85[CEU][hapmap]
rs4345043	0.98[ASN][1000 genomes]
rs4347976	0.84[CEU][hapmap]
rs4392388	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4398404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4401342	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4420835	0.96[ASN][1000 genomes]
rs4423739	0.98[ASN][1000 genomes]
rs4429601	0.98[ASN][1000 genomes]
rs4434123	0.80[CEU][hapmap]
rs4434124	0.98[ASN][1000 genomes]
rs4435608	0.98[ASN][1000 genomes]
rs4450779	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4478055	0.94[ASN][1000 genomes]
rs4479562	0.98[ASN][1000 genomes]
rs4505669	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4530500	0.98[ASN][1000 genomes]
rs4538347	0.85[CEU][hapmap]
rs4560270	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4560274	0.98[ASN][1000 genomes]
rs4568108	0.98[ASN][1000 genomes]
rs4571212	0.98[ASN][1000 genomes]
rs4572740	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4580518	0.98[ASN][1000 genomes]
rs4585166	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4591478	0.98[ASN][1000 genomes]
rs4597682	0.98[ASN][1000 genomes]
rs4611789	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4622877	0.85[CEU][hapmap]
rs4632517	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4638935	0.85[CEU][hapmap]
rs4682096	0.98[ASN][1000 genomes]
rs4682097	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4682367	0.91[CEU][hapmap]
rs4682373	0.85[CEU][hapmap]
rs4682380	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4682382	0.98[ASN][1000 genomes]
rs55735606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56335531	0.93[ASN][1000 genomes]
rs59043683	0.95[ASN][1000 genomes]
rs59967068	0.98[ASN][1000 genomes]
rs62276970	0.98[ASN][1000 genomes]
rs6438061	0.98[ASN][1000 genomes]
rs6438062	0.98[ASN][1000 genomes]
rs6773916	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6781344	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6781844	0.84[CEU][hapmap]
rs6787323	0.89[CEU][hapmap]
rs6788397	0.98[ASN][1000 genomes]
rs6789875	0.85[CEU][hapmap]
rs6791182	0.92[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs6796949	0.98[ASN][1000 genomes]
rs6797177	0.84[CEU][hapmap]
rs6798551	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6798665	0.80[ASN][1000 genomes]
rs6801795	0.85[CEU][hapmap]
rs6804836	0.83[CEU][hapmap]
rs6805112	0.85[CEU][hapmap]
rs6805505	0.83[CEU][hapmap]
rs6805887	0.85[CEU][hapmap]
rs73853382	0.95[ASN][1000 genomes]
rs7431999	0.84[CEU][hapmap]
rs7613061	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7615460	0.83[CEU][hapmap]
rs7616261	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7624367	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7625173	0.92[CHB][hapmap]
rs7625249	0.91[CEU][hapmap]
rs7627314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7635054	0.98[ASN][1000 genomes]
rs7635069	0.98[ASN][1000 genomes]
rs7635156	0.98[ASN][1000 genomes]
rs7637676	0.85[CEU][hapmap]
rs7637682	0.84[CEU][hapmap]
rs7638520	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9288939	0.84[CEU][hapmap]
rs9288942	0.84[CEU][hapmap]
rs9288946	0.94[ASN][1000 genomes]
rs9288947	0.92[ASN][1000 genomes]
rs9758396	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9809384	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs9809404	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9809696	0.97[ASN][1000 genomes]
rs9810170	0.81[CEU][hapmap]
rs9813794	0.98[ASN][1000 genomes]
rs9822786	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs9823421	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9826043	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9847574	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9858911	0.98[ASN][1000 genomes]
rs9860819	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9863061	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9865494	0.97[ASN][1000 genomes]
rs9865784	0.98[ASN][1000 genomes]
rs9869657	1.00[ASN][1000 genomes]
rs9870132	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9871492	0.85[CEU][hapmap]
rs9873623	0.98[ASN][1000 genomes]
rs9878213	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9878675	0.98[ASN][1000 genomes]
rs9879184	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111942400-111952400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111950800-111951400	Enhancers	GM12878-XiMat	blood
3	chr3:111951000-111951600	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links