Variant report

Variant	rs6798665
Chromosome Location	chr3:111891022-111891023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1032398	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10934141	0.80[ASN][1000 genomes]
rs11707558	0.80[ASN][1000 genomes]
rs12491362	0.82[ASN][1000 genomes]
rs12634742	0.80[ASN][1000 genomes]
rs12634769	0.80[ASN][1000 genomes]
rs12637609	0.80[ASN][1000 genomes]
rs13091454	0.80[ASN][1000 genomes]
rs1492491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16859355	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17446744	0.80[ASN][1000 genomes]
rs4282034	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4450779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55735606	0.80[ASN][1000 genomes]
rs59043683	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6781344	0.80[ASN][1000 genomes]
rs73853382	0.81[ASN][1000 genomes]
rs9869657	0.80[ASN][1000 genomes]
rs9870132	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111876400-111891400	Weak transcription	Right Ventricle	heart
2	chr3:111885400-111894000	Weak transcription	Gastric	stomach
3	chr3:111885400-111897200	Weak transcription	Pancreas	Pancrea
4	chr3:111885400-111904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:111885400-111904600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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