Variant report

Variant	rs73853382
Chromosome Location	chr3:111987116-111987117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10934141	0.95[ASN][1000 genomes]
rs10934151	0.97[ASN][1000 genomes]
rs10934152	0.97[ASN][1000 genomes]
rs11707558	0.95[ASN][1000 genomes]
rs11923778	0.80[ASN][1000 genomes]
rs11929523	0.82[ASN][1000 genomes]
rs11929540	0.82[ASN][1000 genomes]
rs12487206	0.95[ASN][1000 genomes]
rs12491362	0.93[ASN][1000 genomes]
rs12634742	0.95[ASN][1000 genomes]
rs12634769	0.95[ASN][1000 genomes]
rs12637609	0.95[ASN][1000 genomes]
rs1304787	0.97[ASN][1000 genomes]
rs13080158	0.96[ASN][1000 genomes]
rs13081485	0.93[ASN][1000 genomes]
rs13081935	0.93[ASN][1000 genomes]
rs13091454	0.95[ASN][1000 genomes]
rs1492491	0.89[ASN][1000 genomes]
rs16859355	0.97[ASN][1000 genomes]
rs17446744	0.95[ASN][1000 genomes]
rs1826392	0.95[ASN][1000 genomes]
rs4234415	0.93[ASN][1000 genomes]
rs4264699	0.97[ASN][1000 genomes]
rs4280609	0.97[ASN][1000 genomes]
rs4282034	0.89[ASN][1000 genomes]
rs4299459	0.95[ASN][1000 genomes]
rs4300982	0.94[ASN][1000 genomes]
rs4345043	0.97[ASN][1000 genomes]
rs4420835	0.95[ASN][1000 genomes]
rs4423739	0.97[ASN][1000 genomes]
rs4429601	0.97[ASN][1000 genomes]
rs4434124	0.97[ASN][1000 genomes]
rs4435608	0.97[ASN][1000 genomes]
rs4450779	0.89[ASN][1000 genomes]
rs4478055	0.93[ASN][1000 genomes]
rs4479562	0.97[ASN][1000 genomes]
rs4505669	0.97[ASN][1000 genomes]
rs4530500	0.97[ASN][1000 genomes]
rs4560270	0.96[ASN][1000 genomes]
rs4560274	0.97[ASN][1000 genomes]
rs4568108	0.97[ASN][1000 genomes]
rs4571212	0.97[ASN][1000 genomes]
rs4572740	0.93[ASN][1000 genomes]
rs4580518	0.97[ASN][1000 genomes]
rs4585166	0.89[ASN][1000 genomes]
rs4591478	0.97[ASN][1000 genomes]
rs4597682	0.97[ASN][1000 genomes]
rs4611789	0.93[ASN][1000 genomes]
rs4632517	0.93[ASN][1000 genomes]
rs4682096	0.97[ASN][1000 genomes]
rs4682097	0.97[ASN][1000 genomes]
rs4682382	0.97[ASN][1000 genomes]
rs55735606	0.95[ASN][1000 genomes]
rs56335531	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57512585	0.80[ASN][1000 genomes]
rs59043683	1.00[ASN][1000 genomes]
rs59967068	0.97[ASN][1000 genomes]
rs62276970	0.97[ASN][1000 genomes]
rs6438061	0.97[ASN][1000 genomes]
rs6438062	0.97[ASN][1000 genomes]
rs6781344	0.95[ASN][1000 genomes]
rs6788397	0.97[ASN][1000 genomes]
rs6791182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6796949	0.97[ASN][1000 genomes]
rs6798665	0.81[ASN][1000 genomes]
rs71618779	0.80[ASN][1000 genomes]
rs7613061	0.97[ASN][1000 genomes]
rs7624367	0.97[ASN][1000 genomes]
rs7635054	0.97[ASN][1000 genomes]
rs7635069	0.97[ASN][1000 genomes]
rs7635156	0.97[ASN][1000 genomes]
rs7638520	0.97[ASN][1000 genomes]
rs9288946	0.93[ASN][1000 genomes]
rs9288947	0.91[ASN][1000 genomes]
rs9809384	0.97[ASN][1000 genomes]
rs9809404	0.97[ASN][1000 genomes]
rs9809696	0.96[ASN][1000 genomes]
rs9813794	0.97[ASN][1000 genomes]
rs9822786	0.97[ASN][1000 genomes]
rs9823421	0.97[ASN][1000 genomes]
rs9858911	0.97[ASN][1000 genomes]
rs9860819	0.97[ASN][1000 genomes]
rs9865494	0.96[ASN][1000 genomes]
rs9865784	0.97[ASN][1000 genomes]
rs9869657	0.95[ASN][1000 genomes]
rs9870132	0.95[ASN][1000 genomes]
rs9873623	0.97[ASN][1000 genomes]
rs9878213	0.97[ASN][1000 genomes]
rs9878675	0.97[ASN][1000 genomes]
rs9879184	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1796541	chr3:111978288-111992216	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111972200-111999000	Weak transcription	Left Ventricle	heart

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