Variant report

Variant	rs4682492
Chromosome Location	chr3:113275541-113275542
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113206409..113208737-chr3:113273069..113276271,3	MCF-7	breast:
2	chr3:113233433..113235581-chr3:113273255..113276149,3	MCF-7	breast:
3	chr3:113274620..113277529-chr3:113285320..113288122,4	MCF-7	breast:
4	chr3:113270774..113272504-chr3:113274583..113276663,3	MCF-7	breast:
5	chr3:113230896..113236069-chr3:113272608..113276294,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163611	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1398733	1.00[EUR][1000 genomes]
rs2447042	1.00[EUR][1000 genomes]
rs56197161	0.87[EUR][1000 genomes]
rs59532653	1.00[EUR][1000 genomes]
rs67512681	1.00[EUR][1000 genomes]
rs72950831	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	esv2265706	chr3:113275541-113276040	Weak transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:113257200-113277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
6	chr3:113261200-113276200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:113266800-113276400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:113267400-113276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:113267400-113278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:113268200-113279400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:113269200-113276600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:113269400-113276200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:113271000-113277600	Enhancers	HepG2	liver
15	chr3:113271400-113276400	Weak transcription	Stomach Mucosa	stomach
16	chr3:113272000-113276600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:113272200-113276000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:113273200-113275800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr3:113273200-113276200	Weak transcription	GM12878-XiMat	blood
20	chr3:113273800-113276400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:113274000-113278200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr3:113274400-113278800	Weak transcription	Primary T cells from cord blood	blood
23	chr3:113275000-113276000	Enhancers	A549	lung
24	chr3:113275200-113276000	Enhancers	NHEK	skin
25	chr3:113275200-113277000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:113275200-113277000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:113275200-113277000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:113275200-113277000	Enhancers	HMEC	breast
29	chr3:113275400-113275800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr3:113275400-113276200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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