Variant report

Variant	rs59532653
Chromosome Location	chr3:113264240-113264241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113232632..113237183-chr3:113263393..113272581,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163611	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1398733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2447042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682492	1.00[EUR][1000 genomes]
rs56197161	0.87[EUR][1000 genomes]
rs58512733	0.81[AFR][1000 genomes]
rs66784102	0.81[AFR][1000 genomes]
rs67201219	0.81[AFR][1000 genomes]
rs67512681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv524086	chr3:113255172-113264994	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113274800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:113257200-113265200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr3:113257200-113265800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:113257200-113277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
9	chr3:113257400-113264800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:113258400-113267600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:113261000-113267400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:113261200-113266800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:113261200-113276200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:113262400-113264800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:113262400-113266400	Weak transcription	Thymus	Thymus
16	chr3:113262400-113272200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:113262600-113264400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:113263000-113265000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:113263600-113264400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr3:113263600-113264600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:113263600-113270000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:113263800-113273000	Weak transcription	Primary T cells from cord blood	blood
24	chr3:113264200-113264400	Active TSS	GM12878-XiMat	blood

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